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MH153804.1__AWN03656.1__PBI_JACE_36__00036

Bact-Vir

MH153804.1__AWN03656.1__PBI_JACE_36__00036

Identity

Accession:
MH153804 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jacevirus› Rhodococcus_phage_Jace

TaxID: 2182360

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-104
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ft8C01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 41.0 4.22e-01 84.7% 78.2%
3uyjA00 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.59 41.0 2.77e-01 100.0% 18.5%
6hxiA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.56 41.0 2.97e-01 100.0% 24.6%
3al5B01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.56 45.0 2.91e-01 100.0% 19.8%
2hpuA02 3.30.70.2050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 35.0 3.47e-01 100.0% 61.9%
2nu8B02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 44.0 4.06e-01 100.0% 71.4%
5tdeA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 41.0 3.82e-01 100.0% 67.1%
5eyaF00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 37.0 3.52e-01 100.0% 60.5%
1mhwC00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.52 32.0 3.58e-01 86.4% 90.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3844951 386.1.1.24 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 0.63 36.0 3.25e-01 72.9% 40.0%
4030156 304.9.1.9 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_2 0.62 52.0 4.17e-01 100.0% 66.2%
3400875 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.61 52.0 4.15e-01 100.0% 66.2%
3406669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 40.0 3.39e-01 100.0% 41.0%
3264069 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.60 42.0 4.24e-01 100.0% 75.0%
4821505 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.57 43.0 4.20e-01 83.1% 100.0%
3945340 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.57 42.0 3.21e-01 100.0% 32.0%
4528041 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.57 38.0 3.87e-01 83.1% 70.0%
3887527 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.57 41.0 4.12e-01 81.4% 78.3%
4886584 3115.6.1.1 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.57 42.0 4.00e-01 100.0% 67.1%
3260609 10.12.1.52 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.56 45.0 2.95e-01 100.0% 19.6%
4030871 3115.6.1.1 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.56 42.0 3.98e-01 100.0% 67.1%
3652643 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 42.0 4.02e-01 84.7% 71.4%
3998113 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 42.0 3.80e-01 96.6% 58.8%
3353195 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 42.0 4.33e-01 84.7% 92.6%
3344373 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 40.0 4.04e-01 89.8% 83.3%
3657758 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 43.0 4.10e-01 98.3% 98.7%
3657242 2002.1.1.93 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_77 0.53 37.0 2.46e-01 76.3% 42.0%
4083015 7056.1.1.3 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.53 35.0 3.99e-01 96.6% 100.0%
4031372 862.1.1.12 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PF29905 0.53 46.0 3.21e-01 100.0% 38.5%
3488561 386.1.1.209 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › WAC_Acf1_DNA_bd 0.53 35.0 3.41e-01 86.4% 61.5%
3388125 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 35.0 3.76e-01 94.9% 97.8%
4136939 7056.1.1.0 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.51 34.0 3.85e-01 94.9% 100.0%
4931448 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 35.0 3.68e-01 94.9% 94.0%