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MH153804.1__AWN03684.1__PBI_JACE_64__00064

Bact-Vir

MH153804.1__AWN03684.1__PBI_JACE_64__00064

Identity

Accession:
MH153804 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-23_38-85
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ztmA02 1.10.287.2480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 54.0 3.76e-01 98.4% 98.5%
1g5gA02 1.10.287.2480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 51.0 3.69e-01 93.7% 100.0%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.64e-01 100.0% 46.6%
4ofyD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 3.75e-01 100.0% 47.7%
2vouA02 3.30.9.60 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.59 49.0 3.74e-01 100.0% 39.5%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 47.0 3.47e-01 90.5% 54.7%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.57 43.0 3.64e-01 84.1% 62.8%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 38.0 3.26e-01 98.4% 41.9%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.32e-01 71.4% 92.3%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.56 39.0 2.92e-01 74.6% 100.0%
3bqwA01 3.15.30.10 Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like 0.56 47.0 3.36e-01 100.0% 60.5%
6oodA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.55 48.0 3.66e-01 98.4% 98.0%
4ckbD02 3.20.100.20 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › 0.55 45.0 3.18e-01 92.1% 47.3%
3rkxA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 48.0 3.41e-01 100.0% 42.0%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 47.0 4.20e-01 100.0% 68.5%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 48.0 3.70e-01 100.0% 55.2%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 49.0 3.93e-01 100.0% 85.2%
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 45.0 3.29e-01 93.7% 70.1%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 45.0 3.70e-01 93.7% 86.6%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.54 46.0 3.65e-01 100.0% 96.5%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.54 49.0 4.04e-01 100.0% 61.1%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.53 48.0 4.43e-01 98.4% 80.0%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.81e-01 100.0% 59.8%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 3.48e-01 96.8% 42.4%
7dluA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 4.11e-01 98.4% 73.4%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.53 47.0 4.21e-01 96.8% 76.5%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 44.0 3.80e-01 93.7% 100.0%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 44.0 3.48e-01 93.7% 80.8%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.68e-01 90.5% 96.0%
3mxqC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 47.0 3.76e-01 100.0% 83.2%
1hxdA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 46.0 3.27e-01 100.0% 40.1%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.52 39.0 3.63e-01 100.0% 61.6%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.52 45.0 3.51e-01 100.0% 83.8%
3ghmA03 2.60.120.830 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.51e-01 100.0% 75.4%
1xmbA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 45.0 3.87e-01 98.4% 61.4%
1kcvL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.57e-01 90.5% 92.2%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 45.0 3.65e-01 98.4% 85.0%
6blkC00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 43.0 3.29e-01 98.4% 50.0%
2gb3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 42.0 3.23e-01 96.8% 66.5%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4012751 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.66 57.0 4.41e-01 100.0% 44.4%
3250001 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.63 44.0 4.01e-01 96.8% 52.8%
3692586 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.62 50.0 4.06e-01 100.0% 46.4%
3182544 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 54.0 4.13e-01 96.8% 46.4%
2774000 881.4.1.1 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C 0.61 44.0 3.71e-01 95.2% 46.6%
3392728 331.9.1.8 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.60 45.0 3.69e-01 84.1% 56.8%
4507345 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.59 46.0 4.28e-01 100.0% 66.3%
5015492 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.58 53.0 4.24e-01 100.0% 99.2%
2722518 331.23.1.1 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.58 52.0 3.62e-01 100.0% 36.0%
5071885 5090.2.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain 0.58 50.0 3.87e-01 96.8% 87.1%
3383095 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 52.0 3.40e-01 100.0% 69.8%
4050475 331.9.1.1 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Alpha_adaptin_C 0.56 42.0 3.51e-01 84.1% 57.7%
5048375 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 50.0 3.98e-01 98.4% 66.4%
5049326 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 47.0 3.77e-01 93.7% 68.0%
3834748 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.55 50.0 4.36e-01 100.0% 66.3%
3298960 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.55 47.0 4.61e-01 100.0% 87.1%
4088643 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.55 49.0 4.13e-01 100.0% 67.6%
5051729 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 45.0 3.42e-01 93.7% 55.0%
4028735 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.55 48.0 4.08e-01 100.0% 61.0%
3286654 223.1.1.37 a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_N 0.55 47.0 4.05e-01 96.8% 95.0%
3340180 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.54 49.0 4.18e-01 100.0% 63.0%
4947136 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.54 46.0 4.14e-01 96.8% 77.8%
5038341 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.54 49.0 4.10e-01 100.0% 61.9%
5052185 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 45.0 3.57e-01 93.7% 62.3%
3611326 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.54 46.0 2.74e-01 100.0% 11.9%
3417210 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.54 48.0 4.26e-01 100.0% 72.2%
3265287 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 41.0 2.65e-01 88.9% 40.8%
5054556 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.53 46.0 4.15e-01 100.0% 81.1%
3830572 5058.1.1.84 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Msl2-3_C 0.53 47.0 3.94e-01 98.4% 61.0%
3506226 304.55.2.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.53 46.0 3.85e-01 98.4% 69.1%
3820425 3758.1.1.105 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Msl2-3_C 0.53 47.0 3.96e-01 100.0% 61.9%
4956199 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.53 39.0 3.55e-01 96.8% 56.7%
3360714 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 43.0 2.76e-01 92.1% 50.0%
5050074 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 46.0 3.64e-01 100.0% 60.7%
3305756 304.39.1.2 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Msl2-3_C 0.53 46.0 3.89e-01 100.0% 59.1%
4928046 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 3.76e-01 100.0% 72.5%
3964728 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.52 47.0 4.05e-01 100.0% 65.3%
4980649 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.52 47.0 3.92e-01 100.0% 58.3%
5029187 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.52 45.0 4.12e-01 100.0% 73.5%
3327104 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.52 43.0 3.85e-01 100.0% 81.0%
3602951 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.52 45.0 3.81e-01 100.0% 58.1%
3889564 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.52 45.0 3.42e-01 100.0% 45.0%
3822839 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.52 37.0 3.45e-01 98.4% 58.8%
3308179 9.13.1.1 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.52 44.0 3.29e-01 100.0% 85.1%
4027274 273.1.1.2 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.52 47.0 3.52e-01 100.0% 43.4%
3470260 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.52 43.0 3.45e-01 96.8% 63.7%
4960104 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 43.0 3.41e-01 93.7% 84.6%
3808918 387.1.5.7 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL 0.51 44.0 4.54e-01 100.0% 100.0%
4928263 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.65e-01 96.8% 79.1%
3176914 3519.1.1.1 beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p 0.51 44.0 3.63e-01 100.0% 93.3%
3841571 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.51 45.0 3.27e-01 100.0% 40.0%
3238778 223.2.1.42 a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin 0.51 43.0 3.11e-01 100.0% 45.4%
5060761 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.51 45.0 3.79e-01 96.8% 58.1%
3602995 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 46.0 3.74e-01 100.0% 65.2%
5016233 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.61e-01 93.7% 69.4%
3592518 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.17e-01 92.1% 76.9%
3928361 220.1.1.46 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.51 43.0 3.45e-01 100.0% 75.0%
4370190 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.51 44.0 3.68e-01 100.0% 58.3%
3837073 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.50 39.0 2.61e-01 88.9% 49.7%
3822140 387.1.5.7 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL 0.50 46.0 4.47e-01 100.0% 90.0%
3820521 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.50 44.0 2.85e-01 100.0% 21.0%
4999152 872.1.1.2 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin 0.50 45.0 4.42e-01 100.0% 94.2%
1298175 223.1.1.37 a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_N 0.50 42.0 3.69e-01 95.2% 89.8%