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MH153807.1__AWN03979.1__PBI_PEREGRIN_152__00140
Bact-VirMH153807.1__AWN03979.1__PBI_PEREGRIN_152__00140
Identity
- Accession:
- MH153807 ↗
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Taxonomy
TaxID: 2182361
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-97
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ragB00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.66 | 53.0 | 3.56e-01 | 89.7% | 96.5% |
| 4ertA01 | 1.10.490.160 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.59 | 47.0 | 3.51e-01 | 93.1% | 90.8% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.57 | 37.0 | 3.77e-01 | 98.3% | 66.1% |
| 2wfgA00 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.57 | 48.0 | 3.17e-01 | 94.8% | 22.0% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 34.0 | 3.73e-01 | 74.1% | 74.5% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 46.0 | 3.78e-01 | 96.6% | 68.8% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 37.0 | 2.67e-01 | 79.3% | 65.4% |
| 1eteA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 43.0 | 3.37e-01 | 98.3% | 95.5% |
| 2dn6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 36.0 | 2.96e-01 | 77.6% | 93.9% |
| 3cxbB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 38.0 | 3.34e-01 | 89.7% | 79.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3965856 | 107.1.1.13 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › NorB_cytochrome_c-like | 0.71 | 51.0 | 3.37e-01 | 75.9% | 70.5% |
| 1395085 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.70 | 53.0 | 3.55e-01 | 82.8% | 97.0% |
| 3977749 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.68 | 52.0 | 3.76e-01 | 82.8% | 47.3% |
| 3597982 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.66 | 50.0 | 3.75e-01 | 94.8% | 33.8% |
| 3733225 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 46.0 | 4.87e-01 | 93.1% | 100.0% |
| 3927306 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 44.0 | 3.66e-01 | 87.9% | 84.3% |
| 3068777 | 107.1.1.0 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c | 0.57 | 48.0 | 3.27e-01 | 96.6% | 44.2% |
| 4963772 | 107.1.1.13 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › NorB_cytochrome_c-like | 0.56 | 48.0 | 3.29e-01 | 96.6% | 43.8% |
| 3727193 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 44.0 | 4.62e-01 | 86.2% | 100.0% |
| 5074217 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.56 | 42.0 | 2.96e-01 | 82.8% | 73.0% |
| 3397134 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.55 | 39.0 | 4.10e-01 | 93.1% | 86.0% |
| 3217816 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 42.0 | 3.74e-01 | 93.1% | 82.2% |
| None | — | 0.52 | 40.0 | 2.53e-01 | 82.8% | 76.0% | |
| 4020933 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.52 | 42.0 | 2.68e-01 | 91.4% | 48.3% |
| 3711668 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.51 | 44.0 | 3.86e-01 | 100.0% | 86.7% |