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MH153807.1__AWN03981.1__PBI_PEREGRIN_154__00142

Bact-Vir

MH153807.1__AWN03981.1__PBI_PEREGRIN_154__00142

Identity

Accession:
MH153807 ↗
Kingdom:
phage

Quality

58.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-45
PDB
D2 medium residues 53-89
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.86 76.0 6.07e-01 100.0% 70.4%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.85 75.0 5.60e-01 100.0% 56.2%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.83 73.0 5.94e-01 100.0% 72.5%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.83 73.0 6.01e-01 100.0% 61.2%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.83 72.0 5.08e-01 100.0% 47.4%
1a9xA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.79 68.0 4.24e-01 100.0% 70.4%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.79 68.0 5.08e-01 100.0% 56.5%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.78 68.0 5.58e-01 100.0% 67.6%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.78 66.0 5.40e-01 100.0% 63.4%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 67.0 4.94e-01 100.0% 45.4%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.77 64.0 4.76e-01 100.0% 39.8%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.77 66.0 4.93e-01 100.0% 45.3%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.76 63.0 4.63e-01 100.0% 37.1%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 63.0 4.83e-01 100.0% 54.9%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 59.0 4.54e-01 100.0% 56.4%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 58.0 5.12e-01 100.0% 75.9%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.65 49.0 4.08e-01 83.8% 95.6%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 50.0 3.74e-01 91.9% 32.3%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 48.0 3.65e-01 94.6% 39.8%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.61 48.0 2.73e-01 91.9% 16.7%
3mfqA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.60 47.0 3.24e-01 89.2% 83.7%
1v8wA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 42.0 2.92e-01 78.4% 35.1%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 49.0 3.30e-01 100.0% 63.5%
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.58 43.0 3.66e-01 89.2% 62.2%
1g3pA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.57 44.0 3.53e-01 94.6% 46.6%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.56 42.0 3.50e-01 94.6% 50.0%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.50e-01 100.0% 19.1%
1z9hA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 42.0 3.47e-01 89.2% 93.8%
4kdyB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 43.0 3.47e-01 91.9% 98.8%
3witA00 2.20.220.20 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › 0.54 41.0 3.57e-01 100.0% 51.6%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 40.0 2.89e-01 89.2% 34.6%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 3.52e-01 97.3% 60.8%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.54 41.0 2.72e-01 94.6% 25.0%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.53 40.0 3.42e-01 100.0% 77.2%
3fg6A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 39.0 3.06e-01 89.2% 84.8%
3we0A03 1.10.405.40 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › 0.52 36.0 2.55e-01 75.7% 20.4%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 45.0 3.14e-01 94.6% 33.3%
2nttA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 3.42e-01 97.3% 74.3%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.51 36.0 3.59e-01 81.1% 75.6%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 36.0 2.55e-01 91.9% 23.8%
2h4oA00 6.20.120.10 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 35.0 3.08e-01 73.0% 43.5%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 43.0 2.67e-01 100.0% 38.7%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 41.0 2.88e-01 89.2% 32.1%
2o3iA02 2.40.390.10 Mainly Beta › Beta Barrel › CV3147-like › CV3147-like 0.50 40.0 2.88e-01 100.0% 71.0%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3585833 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.90 82.0 5.70e-01 100.0% 37.3%
3514659 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.89 80.0 5.70e-01 100.0% 43.0%
3503204 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.87 77.0 5.65e-01 100.0% 43.2%
3515433 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.86 76.0 6.31e-01 100.0% 63.1%
4966261 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.86 75.0 6.24e-01 100.0% 60.0%
3403839 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.84 75.0 5.55e-01 100.0% 44.4%
4966382 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.84 74.0 6.11e-01 100.0% 60.0%
3709800 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.84 74.0 5.43e-01 100.0% 41.1%
5012231 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.82 71.0 5.53e-01 100.0% 46.3%
4283257 243.3.1.52 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.81 66.0 3.82e-01 91.9% 13.0%
3408937 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.80 70.0 5.45e-01 100.0% 50.0%
4323662 4100.1.1.8 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF5395 0.79 62.0 4.93e-01 100.0% 42.5%
4983767 218.4.1.0 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain 0.78 67.0 5.08e-01 100.0% 68.9%
4959884 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.78 64.0 5.77e-01 100.0% 69.1%
3519033 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.78 69.0 5.25e-01 100.0% 52.9%
4260316 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.78 69.0 5.31e-01 100.0% 56.2%
4567415 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.77 68.0 4.93e-01 100.0% 44.0%
3887511 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.77 68.0 4.91e-01 100.0% 44.0%
3927172 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.77 52.0 2.89e-01 70.3% 5.4%
3961802 243.5.1.9 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › UPF0182 0.73 57.0 3.64e-01 91.9% 23.5%
5054385 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.73 62.0 5.11e-01 100.0% 85.7%
5064574 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.72 47.0 3.97e-01 100.0% 41.7%
4057011 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.72 55.0 4.31e-01 91.9% 48.9%
3964438 11.1.1.404 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4390 0.70 54.0 3.57e-01 89.2% 20.1%
3882796 1021.1.1.2 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.69 49.0 3.79e-01 78.4% 36.5%
4007827 386.1.1.81 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1391 0.68 54.0 5.31e-01 97.3% 85.0%
3224950 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 47.0 3.42e-01 73.0% 35.2%
4112122 386.1.1.81 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1391 0.67 52.0 5.19e-01 97.3% 85.0%
5019170 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 54.0 3.99e-01 100.0% 73.0%
4954545 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.66 49.0 3.67e-01 78.4% 58.9%
4945896 2003.1.2.300 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.66 44.0 2.56e-01 70.3% 6.6%
3932836 6043.1.1.4 a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.65 47.0 4.02e-01 94.6% 46.2%
4379527 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.63 54.0 4.12e-01 97.3% 83.5%
5052723 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 51.0 4.12e-01 100.0% 57.5%
3949260 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.61 50.0 3.77e-01 100.0% 36.4%
4024720 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 50.0 3.27e-01 100.0% 50.5%
3404585 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 48.0 4.53e-01 100.0% 80.0%
4052768 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.60 46.0 3.17e-01 89.2% 99.3%
4236664 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.58 41.0 2.80e-01 81.1% 57.6%
3716834 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.58 45.0 3.30e-01 86.5% 86.7%
3517106 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 41.0 2.50e-01 83.8% 22.3%
3936608 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 3.10e-01 83.8% 46.4%
3487339 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.57 45.0 3.00e-01 100.0% 27.2%
4137901 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.57 47.0 2.87e-01 100.0% 38.6%
3925684 5001.1.1.60 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx 0.57 49.0 2.91e-01 100.0% 33.3%
3483861 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.56 46.0 3.59e-01 91.9% 62.5%
3892646 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.56 44.0 2.88e-01 97.3% 17.5%
3929748 109.4.1.1303 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N, HAT_PRP39_C 0.56 45.0 2.57e-01 89.2% 13.9%
5078315 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 42.0 2.37e-01 100.0% 10.7%
3996291 4351.1.1.1 alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.54 42.0 2.76e-01 100.0% 27.3%
4990536 101.1.9.134 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.54 45.0 3.76e-01 94.6% 90.8%
4931058 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 46.0 3.03e-01 100.0% 50.0%
3599722 109.4.1.548 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIP120 0.53 41.0 2.20e-01 91.9% 8.1%
3754138 5.1.4.302 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML 0.53 40.0 2.35e-01 94.6% 8.9%
3702105 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 41.0 3.10e-01 86.5% 71.7%
3190113 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 40.0 2.45e-01 94.6% 10.8%
5051446 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.52 43.0 3.04e-01 100.0% 61.4%
4964968 192.2.1.88 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › NFACT_N 0.52 43.0 2.96e-01 100.0% 53.8%
5045441 192.2.1.88 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › NFACT_N 0.52 45.0 2.99e-01 100.0% 50.6%
3203780 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.52 44.0 2.93e-01 100.0% 52.7%
4434271 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 40.0 2.99e-01 100.0% 68.0%
5024500 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.51 43.0 3.23e-01 100.0% 58.1%
3787034 5.1.4.250 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF2415 0.51 40.0 2.35e-01 100.0% 17.3%
4937431 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 42.0 2.86e-01 100.0% 49.7%
4960634 3755.3.1.127 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.50 41.0 2.82e-01 100.0% 55.5%