←Back to structures
MH153807.1__AWN04046.1__PBI_PEREGRIN_221__00207
Bact-VirMH153807.1__AWN04046.1__PBI_PEREGRIN_221__00207
Identity
- Accession:
- MH153807 ↗
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Taxonomy
TaxID: 2182361
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-56
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 40.0 | 3.31e-01 | 73.1% | 79.6% |
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.56 | 37.0 | 3.13e-01 | 94.2% | 38.0% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 2.96e-01 | 75.0% | 78.3% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.52 | 41.0 | 3.75e-01 | 92.3% | 94.7% |
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.52 | 38.0 | 2.94e-01 | 80.8% | 36.8% |
| 4qxaB00 | 2.30.29.230 | Mainly Beta › Roll › PH-domain like › | 0.51 | 35.0 | 2.64e-01 | 100.0% | 25.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3811668 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 40.0 | 4.32e-01 | 94.2% | 77.5% |
| 3897868 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.57 | 36.0 | 2.74e-01 | 86.5% | 28.7% |
| 5022131 | 2484.1.1.23 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydantoinase_A | 0.57 | 43.0 | 2.96e-01 | 84.6% | 32.4% |
| 3930817 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 42.0 | 3.14e-01 | 80.8% | 64.4% |
| 3621895 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.56 | 42.0 | 2.72e-01 | 86.5% | 52.0% |
| 3627409 | 6166.1.1.1 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 | 0.54 | 44.0 | 3.04e-01 | 94.2% | 63.0% |
| 3739386 | 109.4.1.3152 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, TPR_16, TPR_19, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N | 0.53 | 40.0 | 2.27e-01 | 84.6% | 16.7% |
| None | — | 0.53 | 42.0 | 2.55e-01 | 92.3% | 15.0% | |
| 3473279 | 2003.1.5.102 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF4471 | 0.53 | 45.0 | 2.88e-01 | 100.0% | 33.8% |
| 4882343 | 2003.1.1.59 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 | 0.53 | 41.0 | 2.61e-01 | 92.3% | 17.9% |
| 3466932 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.52 | 39.0 | 2.71e-01 | 86.5% | 48.1% |
| 3924318 | 6166.1.1.0 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 | 0.51 | 42.0 | 2.92e-01 | 96.2% | 64.6% |
| 3928452 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.50 | 39.0 | 2.56e-01 | 100.0% | 49.6% |
| 3582903 | 311.1.1.0 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein | 0.50 | 41.0 | 2.84e-01 | 100.0% | 53.5% |
| 3739316 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.50 | 34.0 | 2.43e-01 | 86.5% | 20.5% |
| 4995715 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 41.0 | 2.75e-01 | 100.0% | 56.1% |