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MH153807.1__AWN04054.1__PBI_PEREGRIN_229__00215

Bact-Vir

MH153807.1__AWN04054.1__PBI_PEREGRIN_229__00215

Identity

Accession:
MH153807 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Weaselvirus› Rhodococcus_phage_Peregrin

TaxID: 2182361

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: rep: NC_024356.1__YP_009042710.1__IME_062__00062__D2-67
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 52.0 5.18e-01 98.4% 71.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.69 53.0 5.42e-01 98.4% 85.0%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 39.0 3.24e-01 88.7% 37.0%
8bxrA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 40.0 3.66e-01 100.0% 48.3%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 5.13e-01 100.0% 84.5%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 39.0 3.83e-01 88.7% 60.6%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 54.0 5.24e-01 100.0% 88.2%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 38.0 3.33e-01 88.7% 43.0%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.61 50.0 4.49e-01 100.0% 65.2%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.98e-01 100.0% 82.2%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 46.0 2.99e-01 82.3% 94.6%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.60 41.0 3.52e-01 71.0% 62.0%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 38.0 3.31e-01 88.7% 43.0%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 38.0 3.34e-01 88.7% 44.0%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 53.0 4.97e-01 100.0% 81.3%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 53.0 4.95e-01 100.0% 83.1%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 52.0 4.79e-01 98.4% 83.5%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 38.0 3.43e-01 88.7% 48.8%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 37.0 3.44e-01 88.7% 51.2%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 37.0 2.86e-01 88.7% 29.3%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 51.0 4.67e-01 100.0% 87.7%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.52e-01 87.1% 50.0%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 36.0 3.60e-01 88.7% 58.8%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 3.48e-01 87.1% 52.4%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 3.45e-01 87.1% 51.2%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.50e-01 83.9% 50.0%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 3.09e-01 87.1% 39.6%
1uf2C02 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.56 37.0 2.78e-01 100.0% 26.8%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.84e-01 83.9% 69.2%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 42.0 3.61e-01 100.0% 50.0%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 40.0 3.69e-01 98.4% 59.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 43.0 3.65e-01 100.0% 51.4%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 35.0 3.58e-01 88.7% 65.6%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.94e-01 87.1% 78.3%
5tk2B00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 38.0 3.43e-01 75.8% 86.4%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 39.0 3.00e-01 83.9% 82.4%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.78e-01 87.1% 69.6%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.26e-01 77.4% 77.9%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.65e-01 96.8% 55.3%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.52 40.0 3.33e-01 87.1% 94.2%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.49e-01 87.1% 57.5%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.12e-01 91.9% 48.9%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.42e-01 79.0% 93.3%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.16e-01 90.3% 53.8%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.50 41.0 3.12e-01 90.3% 45.8%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.23e-01 100.0% 47.3%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.14e-01 87.1% 50.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.84 76.0 7.52e-01 100.0% 98.5%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.81 73.0 6.85e-01 100.0% 94.7%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.79 71.0 6.83e-01 100.0% 98.6%
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.77 69.0 6.62e-01 100.0% 97.1%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 55.0 6.01e-01 100.0% 94.0%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 52.0 5.06e-01 100.0% 67.1%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.73 53.0 5.15e-01 100.0% 68.6%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.21e-01 100.0% 73.8%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.29e-01 100.0% 76.2%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 56.0 5.52e-01 100.0% 80.0%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 55.0 5.43e-01 100.0% 80.0%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 6.08e-01 100.0% 90.0%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 54.0 5.11e-01 100.0% 69.3%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 54.0 5.39e-01 100.0% 80.0%
4149821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.11e-01 100.0% 80.0%
4937327 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 37.0 3.98e-01 90.3% 63.6%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.39e-01 100.0% 85.1%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.31e-01 100.0% 87.5%
5062267 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.61 39.0 3.84e-01 88.7% 61.5%
3602275 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.61 53.0 3.18e-01 100.0% 19.4%
3743925 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.61 38.0 3.61e-01 88.7% 53.3%
5041526 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.61 41.0 4.17e-01 79.0% 71.7%
3722424 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.61 55.0 4.65e-01 100.0% 82.0%
3677688 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 41.0 3.12e-01 71.0% 62.0%
5045722 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.60 38.0 3.60e-01 88.7% 53.3%
5006390 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 38.0 3.79e-01 88.7% 61.5%
4946147 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 38.0 3.67e-01 90.3% 58.6%
5027113 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 37.0 3.45e-01 88.7% 50.0%
3791017 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.59 44.0 2.80e-01 82.3% 85.5%
3311892 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.58 42.0 2.60e-01 79.0% 72.1%
3820431 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.58 43.0 2.70e-01 80.6% 96.0%
3923062 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.57 39.0 2.40e-01 71.0% 44.9%
3250042 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.61e-01 80.6% 58.7%
4927192 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 3.24e-01 87.1% 45.3%
3230080 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.56 42.0 2.66e-01 82.3% 85.8%
4930766 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.55 39.0 3.14e-01 100.0% 35.6%
5062051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.69e-01 85.5% 69.2%
3281207 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.53 38.0 3.40e-01 87.1% 52.2%
3909408 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.53 39.0 3.65e-01 87.1% 64.0%
5045927 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.53 38.0 3.16e-01 87.1% 43.1%
2697 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.60e-01 87.1% 62.3%
4944823 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.64e-01 83.9% 65.7%
4930866 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.52 36.0 3.43e-01 96.8% 60.0%
3401295 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.89e-01 87.1% 75.4%
4941699 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.80e-01 85.5% 94.7%
4946939 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.52 44.0 3.11e-01 98.4% 51.5%
4973217 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.46e-01 87.1% 57.6%
5078752 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.51 36.0 3.63e-01 87.1% 72.3%
5029109 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.51 37.0 3.32e-01 87.1% 55.3%
5010717 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.69e-01 87.1% 68.0%
3951704 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.51 36.0 3.51e-01 75.8% 77.1%
5060133 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 37.0 3.30e-01 85.5% 54.4%
2841859 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.42e-01 75.8% 71.6%