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MH153807.1__AWN04082.1__PBI_PEREGRIN_257__00243
Bact-VirMH153807.1__AWN04082.1__PBI_PEREGRIN_257__00243
Identity
- Accession:
- MH153807 ↗
- Kingdom:
- phage
Quality
74.2
mean pLDDT
Taxonomy
TaxID: 2182361
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-44
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.71 | 53.0 | 3.91e-01 | 81.4% | 61.3% |
| 2od5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 46.0 | 3.67e-01 | 72.1% | 38.5% |
| 4nzrM02 | 2.160.20.180 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.68 | 48.0 | 3.21e-01 | 100.0% | 18.5% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.67 | 46.0 | 2.89e-01 | 74.4% | 15.8% |
| 3qw9B00 | 2.60.40.4100 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain | 0.65 | 47.0 | 3.29e-01 | 83.7% | 37.3% |
| 4lubB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.63 | 50.0 | 3.93e-01 | 93.0% | 43.0% |
| 3pp9B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 50.0 | 3.44e-01 | 95.3% | 81.0% |
| 4hscX04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.62 | 52.0 | 3.93e-01 | 95.3% | 74.5% |
| 2pziB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 45.0 | 3.26e-01 | 83.7% | 31.7% |
| 1a15A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 40.0 | 3.56e-01 | 72.1% | 43.3% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 50.0 | 4.24e-01 | 90.7% | 68.1% |
| 4nfwF00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.61 | 47.0 | 3.28e-01 | 88.4% | 54.9% |
| 1fvzA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 42.0 | 2.69e-01 | 79.1% | 17.5% |
| 8gn6A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.60 | 50.0 | 3.00e-01 | 100.0% | 91.0% |
| 4k3bA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.60 | 50.0 | 3.95e-01 | 95.3% | 70.7% |
| 1mruA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 48.0 | 3.85e-01 | 93.0% | 56.5% |
| 1vwxP00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.59 | 49.0 | 3.46e-01 | 100.0% | 69.9% |
| 1vclA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.59 | 39.0 | 2.84e-01 | 72.1% | 71.1% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 44.0 | 3.65e-01 | 90.7% | 56.3% |
| 4m3sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 42.0 | 2.96e-01 | 93.0% | 23.3% |
| 1jeyA02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.57 | 40.0 | 2.98e-01 | 79.1% | 98.4% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.56 | 44.0 | 2.80e-01 | 95.3% | 79.3% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.56 | 45.0 | 3.95e-01 | 93.0% | 66.2% |
| 4dooA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.56 | 45.0 | 3.25e-01 | 97.7% | 42.3% |
| 1kf6A04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.55 | 35.0 | 3.69e-01 | 100.0% | 74.3% |
| 5flwA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 43.0 | 2.69e-01 | 100.0% | 18.9% |
| 2d9xA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 38.0 | 2.98e-01 | 79.1% | 36.4% |
| 2qngA01 | 2.60.60.30 | Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains | 0.54 | 41.0 | 3.01e-01 | 100.0% | 26.7% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.54e-01 | 88.4% | 54.8% |
| 1dw9A02 | 3.30.1160.10 | Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain | 0.54 | 42.0 | 3.75e-01 | 93.0% | 82.4% |
| 6pf8A01 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.53 | 40.0 | 2.84e-01 | 93.0% | 92.6% |
| 1zpsA01 | 3.10.20.810 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase | 0.53 | 37.0 | 3.19e-01 | 88.4% | 94.7% |
| 3e66A01 | 3.30.420.230 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Prp8 RNase H domain, palm region | 0.53 | 39.0 | 2.83e-01 | 90.7% | 44.7% |
| 1vwxg01 | 6.20.370.70 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.53 | 37.0 | 3.91e-01 | 90.7% | 91.9% |
| 4rudA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.53 | 40.0 | 3.80e-01 | 95.3% | 70.7% |
| 1dhiA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.52 | 40.0 | 2.88e-01 | 90.7% | 93.1% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.51 | 38.0 | 2.46e-01 | 83.7% | 41.0% |
| 3klqA01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 2.90e-01 | 86.0% | 52.1% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 40.0 | 3.43e-01 | 100.0% | 52.6% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3432796 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.73 | 50.0 | 4.16e-01 | 90.7% | 40.0% |
| 3199847 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.71 | 51.0 | 2.95e-01 | 76.7% | 13.3% |
| 4950462 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.67 | 51.0 | 4.65e-01 | 97.7% | 61.7% |
| 3580652 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.66 | 53.0 | 3.27e-01 | 93.0% | 20.5% |
| 3816768 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.65 | 55.0 | 3.40e-01 | 100.0% | 20.0% |
| 3655121 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.65 | 57.0 | 3.23e-01 | 100.0% | 10.0% |
| 3660715 | 206.1.2.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase | 0.64 | 46.0 | 2.71e-01 | 79.1% | 18.8% |
| 4960647 | 3535.1.1.0 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 | 0.64 | 45.0 | 3.34e-01 | 100.0% | 28.7% |
| 3622841 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.63 | 52.0 | 3.10e-01 | 100.0% | 11.6% |
| 3825031 | 11.1.1.1188 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2854 | 0.63 | 48.0 | 3.61e-01 | 88.4% | 59.2% |
| 4044745 | 309.1.2.6 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › DUF6391 | 0.62 | 51.0 | 3.78e-01 | 100.0% | 81.5% |
| 3774761 | 11.1.1.275 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Ra_N | 0.60 | 50.0 | 4.08e-01 | 97.7% | 72.9% |
| 3178364 | 319.1.1.19 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 | 0.60 | 50.0 | 3.87e-01 | 100.0% | 46.7% |
| 4025203 | 508.1.1.1 ↗ | a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 | 0.60 | 47.0 | 3.42e-01 | 93.0% | 45.5% |
| 4021130 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.59 | 43.0 | 2.85e-01 | 83.7% | 48.0% |
| 5046451 | 139.2.1.0 ↗ | few secondary structure elements › Multiheme cytochromes › Di-heme elbow motif › Di-heme elbow motif | 0.58 | 45.0 | 2.88e-01 | 93.0% | 60.0% |
| 3408311 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 44.0 | 3.49e-01 | 88.4% | 38.0% |
| 3164326 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 43.0 | 3.76e-01 | 88.4% | 52.1% |
| 3650594 | 304.8.1.47 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd | 0.57 | 44.0 | 3.02e-01 | 93.0% | 22.8% |
| 3509582 | 375.1.1.184 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B | 0.56 | 44.0 | 3.04e-01 | 100.0% | 22.7% |
| 4032268 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 41.0 | 3.32e-01 | 81.4% | 84.3% |
| 3578444 | 375.1.1.184 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B | 0.56 | 44.0 | 3.82e-01 | 100.0% | 52.5% |
| 3599907 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 40.0 | 3.06e-01 | 86.0% | 86.2% |
| 4795465 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 46.0 | 2.88e-01 | 100.0% | 19.3% |
| 3517917 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.55 | 43.0 | 3.97e-01 | 100.0% | 81.5% |
| 4561249 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.53 | 42.0 | 3.22e-01 | 93.0% | 40.8% |
| 5010503 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 3.48e-01 | 97.7% | 82.1% |
| 4943515 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.53 | 41.0 | 2.60e-01 | 88.4% | 26.9% |
| 3600935 | 508.1.1.1 ↗ | a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 | 0.52 | 40.0 | 2.90e-01 | 93.0% | 44.7% |
| 3740013 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 40.0 | 2.46e-01 | 97.7% | 91.2% |
| 4556132 | 375.1.1.74 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mu-like_Com | 0.50 | 35.0 | 3.62e-01 | 93.0% | 100.0% |