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MH153812.1__AWN04507.1__PBI_GRAYSON_179__00164

Bact-Vir

MH153812.1__AWN04507.1__PBI_GRAYSON_179__00164

Identity

Accession:
MH153812 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Weaselvirus› Rhodococcus_phage_Grayson

TaxID: 2182359

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-60
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zn4A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 53.0 3.12e-01 90.0% 23.2%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.66 49.0 3.13e-01 80.0% 16.7%
3aj3A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.64 44.0 2.80e-01 74.0% 14.3%
1yf9A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.64 53.0 3.79e-01 96.0% 89.2%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 55.0 3.40e-01 100.0% 86.4%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.63 51.0 3.12e-01 94.0% 13.9%
4u7aA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.17e-01 100.0% 89.3%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.60 42.0 3.54e-01 74.0% 41.1%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.05e-01 100.0% 54.2%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.60 47.0 3.87e-01 90.0% 59.2%
2qyuA03 3.40.1850.10 Alpha Beta › 3-Layer(aba) Sandwich › HECT-like ubiquitin ligase fold › HECT-like ubiquitin ligase 0.59 47.0 4.25e-01 92.0% 78.7%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 42.0 3.66e-01 74.0% 88.5%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 48.0 4.53e-01 100.0% 100.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.58 42.0 3.55e-01 78.0% 45.6%
7zkpA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.57 48.0 3.36e-01 100.0% 32.6%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 48.0 3.88e-01 100.0% 96.3%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 48.0 2.99e-01 100.0% 65.3%
2d73A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 45.0 2.87e-01 92.0% 44.0%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 4.14e-01 92.0% 95.5%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.57e-01 98.0% 100.0%
2qjoB02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 39.0 2.94e-01 76.0% 84.8%
2x7fC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 40.0 3.38e-01 80.0% 84.0%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 48.0 3.70e-01 100.0% 96.7%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.56 45.0 3.47e-01 100.0% 61.7%
2i9xA00 3.30.1120.40 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Stage V sporulation protein G 0.55 42.0 3.68e-01 90.0% 95.3%
1x51A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 38.0 2.93e-01 76.0% 83.2%
4uy9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 3.58e-01 88.0% 85.6%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.27e-01 100.0% 98.3%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 39.0 3.63e-01 80.0% 83.8%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 4.04e-01 94.0% 100.0%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 44.0 3.49e-01 100.0% 95.0%
2vneA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 37.0 2.70e-01 76.0% 32.5%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 46.0 2.82e-01 100.0% 51.7%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 37.0 2.56e-01 78.0% 85.7%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 2.88e-01 100.0% 38.4%
1bcoA02 2.30.30.130 Mainly Beta › Roll › SH3 type barrels. › Transposase, Mu, C-terminal 0.52 37.0 3.45e-01 80.0% 100.0%
2o14A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 35.0 2.65e-01 72.0% 86.5%
5f67B00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 39.0 3.27e-01 84.0% 67.0%
5twbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.76e-01 96.0% 56.1%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.85e-01 96.0% 76.9%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.51 37.0 3.43e-01 86.0% 97.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666104 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.65 52.0 3.17e-01 90.0% 35.1%
4812524 5.1.2.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.63 51.0 3.00e-01 92.0% 12.7%
3786626 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 54.0 3.18e-01 100.0% 73.6%
3482073 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 47.0 4.44e-01 82.0% 86.7%
3933588 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.62 53.0 3.33e-01 100.0% 90.8%
3472726 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.61 51.0 3.95e-01 100.0% 52.8%
3472335 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.76e-01 100.0% 98.5%
None — 0.61 53.0 3.13e-01 100.0% 78.5%
3227779 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 52.0 3.01e-01 98.0% 50.2%
3377093 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.59 44.0 3.41e-01 86.0% 44.0%
5052666 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.59 48.0 4.05e-01 98.0% 88.3%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.00e-01 100.0% 70.5%
214 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.58 46.0 4.20e-01 96.0% 97.4%
4148226 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.58 43.0 3.44e-01 86.0% 37.3%
3264806 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.31e-01 92.0% 86.0%
223784 3581.1.1.0 ↗ a+b complex topology › E3 ubiquitin-protein ligase SopA catalytic domain › E3 ubiquitin-protein ligase SopA catalytic domain › E3 ubiquitin-protein ligase SopA catalytic domain 0.58 45.0 2.71e-01 96.0% 26.7%
3614414 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.51e-01 100.0% 89.7%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.57 44.0 4.48e-01 94.0% 96.0%
5049220 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 38.0 2.79e-01 74.0% 58.1%
3834488 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 39.0 2.23e-01 80.0% 6.3%
3955314 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.55 46.0 2.75e-01 98.0% 72.8%
3604600 10.1.1.64 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF2341 0.55 46.0 2.91e-01 100.0% 41.8%
3596180 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 42.0 3.58e-01 100.0% 95.2%
3320089 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.53 41.0 3.22e-01 92.0% 70.4%
3375746 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.53 41.0 3.12e-01 92.0% 64.5%
3666489 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.53 41.0 3.10e-01 92.0% 75.4%
3588266 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 3.89e-01 90.0% 93.3%
5020988 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 45.0 3.05e-01 100.0% 98.5%
3335113 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 38.0 3.26e-01 82.0% 68.9%
3333224 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.52 40.0 3.09e-01 92.0% 70.3%
3377711 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.52 40.0 3.39e-01 92.0% 67.4%
3671769 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 39.0 3.35e-01 88.0% 70.0%
3990220 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 40.0 2.60e-01 98.0% 29.2%
3340584 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.51 38.0 3.11e-01 92.0% 71.7%
2816341 375.1.1.189 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › EcdD_BsdD_detox 0.51 34.0 3.22e-01 70.0% 60.3%