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MH153812.1__AWN04525.1__PBI_GRAYSON_197__00182
Bact-VirMH153812.1__AWN04525.1__PBI_GRAYSON_197__00182
Identity
- Accession:
- MH153812 ↗
- Kingdom:
- phage
Quality
81.5
mean pLDDT
Taxonomy
TaxID: 2182359
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-74
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.88 | 59.0 | 5.79e-01 | 81.9% | 64.9% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.84 | 60.0 | 5.86e-01 | 75.0% | 69.2% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.83 | 57.0 | 5.78e-01 | 70.8% | 71.8% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 58.0 | 5.74e-01 | 75.0% | 69.7% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.80 | 56.0 | 5.22e-01 | 77.8% | 60.5% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.77 | 61.0 | 5.22e-01 | 83.3% | 100.0% |
| 1n1cA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.75 | 55.0 | 5.32e-01 | 77.8% | 92.7% |
| 1nfvA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.72 | 61.0 | 4.54e-01 | 91.7% | 85.8% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.71 | 58.0 | 4.96e-01 | 88.9% | 56.2% |
| 4x5mA00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.69 | 55.0 | 5.19e-01 | 86.1% | 95.3% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.68 | 56.0 | 4.89e-01 | 88.9% | 60.4% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.68 | 48.0 | 4.01e-01 | 75.0% | 70.2% |
| 1owaA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 53.0 | 4.64e-01 | 84.7% | 95.3% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 53.0 | 4.70e-01 | 91.7% | 89.1% |
| 3ezqA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.60 | 50.0 | 4.22e-01 | 88.9% | 63.5% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.60 | 42.0 | 3.21e-01 | 75.0% | 56.0% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 42.0 | 3.82e-01 | 75.0% | 99.0% |
| 2ca5A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 42.0 | 4.45e-01 | 80.6% | 91.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 149872 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.91 | 65.0 | 6.25e-01 | 77.8% | 67.1% |
| 3708789 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.89 | 69.0 | 6.24e-01 | 81.9% | 69.5% |
| 4027614 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.89 | 69.0 | 4.12e-01 | 80.6% | 14.5% |
| 3605626 | 192.12.1.0 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM | 0.88 | 62.0 | 5.37e-01 | 75.0% | 50.5% |
| 4156473 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.86 | 61.0 | 5.50e-01 | 73.6% | 56.8% |
| 3435097 | 4177.1.1.11 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 | 0.81 | 63.0 | 4.14e-01 | 80.6% | 21.9% |
| 3732397 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.80 | 59.0 | 4.95e-01 | 81.9% | 46.7% |
| 3988454 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.76 | 55.0 | 5.60e-01 | 80.6% | 78.6% |
| 3270160 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.74 | 62.0 | 5.58e-01 | 91.7% | 92.0% |
| 3574626 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.74 | 57.0 | 4.56e-01 | 83.3% | 73.6% |
| 3382764 | 626.1.1.0 ↗ | alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) | 0.73 | 64.0 | 3.69e-01 | 98.6% | 55.3% |
| 4978688 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.73 | 59.0 | 5.34e-01 | 86.1% | 96.8% |
| 3319356 | 650.1.1.5 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › CPP1-like | 0.71 | 49.0 | 5.18e-01 | 72.2% | 86.2% |
| 4955489 | 3922.1.1.359 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF27273 | 0.69 | 48.0 | 4.51e-01 | 73.6% | 62.2% |
| 4945061 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.65 | 56.0 | 4.14e-01 | 100.0% | 84.5% |
| 3660913 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.57 | 40.0 | 3.77e-01 | 73.6% | 66.7% |
D2
medium
residues 85-147
Domain cluster:
rep: JN698994.1__AER47606.1__DS6A_52__00052__D76-144
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.71 | 49.0 | 3.75e-01 | 95.2% | 31.5% |
| 3vwaA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.70 | 42.0 | 3.20e-01 | 74.6% | 26.6% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 46.0 | 3.98e-01 | 95.2% | 42.7% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.67 | 54.0 | 4.74e-01 | 88.9% | 69.1% |
| 2ivxB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 52.0 | 4.28e-01 | 88.9% | 57.4% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 50.0 | 4.37e-01 | 88.9% | 69.1% |
| 3ajfA00 | 1.20.1440.190 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein | 0.60 | 48.0 | 4.32e-01 | 92.1% | 80.4% |
| 4b4yA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 45.0 | 3.52e-01 | 84.1% | 47.0% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.59 | 46.0 | 2.85e-01 | 87.3% | 84.4% |
| 2jnsA01 | 1.20.1270.220 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 42.0 | 3.93e-01 | 77.8% | 81.5% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 49.0 | 4.56e-01 | 95.2% | 91.1% |
| 2j4jF00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.57 | 47.0 | 3.25e-01 | 92.1% | 57.1% |
| 1oqcA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.56 | 50.0 | 4.11e-01 | 100.0% | 92.0% |
| 4jocA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.55 | 43.0 | 2.83e-01 | 95.2% | 40.7% |
| 1adoA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 44.0 | 2.81e-01 | 93.7% | 84.6% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.54 | 42.0 | 3.83e-01 | 85.7% | 86.2% |
| 1xn8A00 | 1.10.3230.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › YqbG-like | 0.54 | 38.0 | 3.11e-01 | 76.2% | 37.4% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.54 | 46.0 | 3.94e-01 | 96.8% | 89.5% |
| 3dbyL00 | 1.20.1260.120 | Mainly Alpha › Up-down Bundle › Ferritin › Protein of unknown function DUF2935 | 0.54 | 42.0 | 2.88e-01 | 88.9% | 70.4% |
| 1sjyA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 40.0 | 3.05e-01 | 82.5% | 88.3% |
| 2vcnA01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.52 | 42.0 | 3.33e-01 | 92.1% | 78.2% |
| 1dpgA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 44.0 | 3.25e-01 | 98.4% | 93.1% |
| 2fozA00 | 1.10.4080.10 | Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 | 0.51 | 43.0 | 2.80e-01 | 100.0% | 62.5% |
| 2p1wA01 | 3.30.2430.10 | Alpha Beta › 2-Layer Sandwich › Phosphothreonine lyase fold › phosphothreonine lyase | 0.51 | 40.0 | 2.96e-01 | 90.5% | 62.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3607341 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.76 | 55.0 | 3.43e-01 | 76.2% | 14.8% |
| 3548628 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.69 | 49.0 | 4.52e-01 | 98.4% | 56.5% |
| 5073004 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.65 | 53.0 | 4.21e-01 | 90.5% | 73.1% |
| 3513657 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.64 | 52.0 | 4.54e-01 | 98.4% | 58.9% |
| 4295116 | 6130.1.1.1 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N | 0.60 | 42.0 | 4.05e-01 | 76.2% | 64.0% |
| 4166813 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.60 | 44.0 | 3.07e-01 | 79.4% | 94.4% |
| 4061006 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.59 | 44.0 | 2.60e-01 | 79.4% | 63.6% |
| 3822456 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.59 | 44.0 | 3.72e-01 | 82.5% | 73.6% |
| 3534090 | 1145.1.1.1 ↗ | few secondary structure elements › nigellin-1.1 › nigellin-1.1 › nigellin-1.1 › Per1 | 0.57 | 46.0 | 4.28e-01 | 88.9% | 100.0% |
| 3398142 | 5.1.4.327 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd | 0.57 | 45.0 | 2.77e-01 | 92.1% | 74.4% |
| 3647515 | 109.4.1.1606 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30484 | 0.55 | 39.0 | 3.27e-01 | 74.6% | 50.9% |
| 5072615 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.55 | 49.0 | 4.07e-01 | 100.0% | 66.4% |
| 3351353 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.55 | 40.0 | 3.46e-01 | 76.2% | 78.9% |
| 3489193 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.55 | 40.0 | 3.44e-01 | 79.4% | 69.5% |
| 4233351 | 304.55.1.2 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Mob_Pre | 0.54 | 46.0 | 3.38e-01 | 100.0% | 55.3% |
| 3995241 | 632.11.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N | 0.54 | 47.0 | 4.08e-01 | 100.0% | 87.0% |
| 3909206 | 632.11.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N | 0.54 | 47.0 | 3.91e-01 | 98.4% | 76.4% |
| 3407907 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 41.0 | 2.97e-01 | 88.9% | 29.7% |
| 5029232 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 42.0 | 3.10e-01 | 88.9% | 59.6% |
| 3563406 | 109.4.1.1334 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long | 0.52 | 41.0 | 2.31e-01 | 85.7% | 11.1% |
| 4620718 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.52 | 41.0 | 2.79e-01 | 85.7% | 83.8% |
| 5019384 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.51 | 39.0 | 3.44e-01 | 82.5% | 69.5% |
| 5025224 | 304.1.1.0 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain | 0.51 | 43.0 | 3.45e-01 | 96.8% | 83.7% |
| 3663329 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.51 | 42.0 | 3.49e-01 | 95.2% | 65.5% |
| 3914795 | 109.4.1.1641 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3, PPR_long | 0.50 | 41.0 | 2.45e-01 | 96.8% | 47.8% |
| 3728483 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 41.0 | 2.92e-01 | 90.5% | 50.0% |