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MH153812.1__AWN04606.1__PBI_GRAYSON_278__00263

Bact-Vir

MH153812.1__AWN04606.1__PBI_GRAYSON_278__00263

Identity

Accession:
MH153812 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.73 47.0 3.17e-01 100.0% 19.9%
1lc5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 47.0 3.92e-01 75.7% 87.2%
1yg9A01 2.60.40.1960 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 33.0 3.23e-01 100.0% 44.6%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 57.0 4.56e-01 100.0% 74.3%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.64 40.0 3.43e-01 100.0% 40.7%
3hdoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 45.0 3.77e-01 75.7% 75.4%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 56.0 4.84e-01 100.0% 73.9%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 54.0 4.10e-01 100.0% 76.1%
1ecsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 52.0 4.38e-01 92.9% 95.0%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 44.0 4.82e-01 87.1% 100.0%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 55.0 4.46e-01 100.0% 59.7%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 42.0 3.97e-01 80.0% 56.7%
2kjzA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 42.0 4.60e-01 90.0% 94.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 47.0 4.36e-01 88.6% 98.9%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.60 44.0 3.95e-01 78.6% 58.8%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.60 52.0 4.21e-01 100.0% 91.5%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.60 42.0 4.38e-01 100.0% 81.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 45.0 4.23e-01 84.3% 100.0%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.65e-01 100.0% 79.8%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.59 51.0 4.26e-01 100.0% 92.2%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.46e-01 100.0% 74.8%
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 53.0 4.47e-01 100.0% 73.3%
4huzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 50.0 3.87e-01 97.1% 74.7%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.12e-01 100.0% 54.9%
3e0rB01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 50.0 4.26e-01 100.0% 99.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 3.99e-01 100.0% 75.0%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.16e-01 100.0% 76.5%
1ci9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 49.0 3.11e-01 100.0% 74.8%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 47.0 3.86e-01 98.6% 85.7%
6kjcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 48.0 3.00e-01 100.0% 72.2%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 48.0 4.28e-01 100.0% 88.0%
5izdA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.54 44.0 3.28e-01 92.9% 57.0%
3r5dA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 45.0 3.80e-01 100.0% 71.3%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.04e-01 98.6% 99.1%
3ffhA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 45.0 3.71e-01 94.3% 74.2%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.53 47.0 4.09e-01 100.0% 92.7%
1u60A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 47.0 3.08e-01 100.0% 78.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 47.0 4.40e-01 100.0% 79.3%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 4.08e-01 98.6% 100.0%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 2.98e-01 98.6% 100.0%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 47.0 3.81e-01 100.0% 67.6%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 3.05e-01 100.0% 99.7%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 45.0 3.52e-01 100.0% 95.0%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 44.0 4.14e-01 98.6% 95.5%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 47.0 4.05e-01 100.0% 68.2%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 45.0 3.78e-01 100.0% 71.4%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.95e-01 98.6% 100.0%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 35.0 2.85e-01 100.0% 32.9%
1tljB00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.51 41.0 3.13e-01 92.9% 95.2%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.51 38.0 2.88e-01 82.9% 75.9%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 44.0 2.78e-01 100.0% 96.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587052 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.77 57.0 5.12e-01 80.0% 57.9%
3930230 331.4.1.5 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1_BRSK 0.76 55.0 4.65e-01 77.1% 57.4%
3490491 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.73 53.0 4.84e-01 78.6% 64.2%
3487063 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.72 53.0 4.77e-01 78.6% 63.9%
3462190 3561.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.67 60.0 3.82e-01 100.0% 21.2%
4955758 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.67 58.0 3.93e-01 100.0% 26.3%
3655242 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.66 60.0 4.55e-01 100.0% 63.1%
3876027 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.66 60.0 4.63e-01 100.0% 53.3%
3765005 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 59.0 3.39e-01 100.0% 11.7%
3690811 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.66 60.0 5.28e-01 100.0% 78.0%
4968206 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.64 46.0 4.33e-01 82.9% 62.4%
3230048 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.64 57.0 4.43e-01 100.0% 59.3%
3995389 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.64 57.0 4.50e-01 100.0% 74.5%
3935052 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.63 56.0 4.58e-01 100.0% 72.3%
3484101 3561.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.62 55.0 3.56e-01 100.0% 31.6%
5723 211.1.1.41 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › PF31120 0.62 42.0 4.61e-01 81.4% 94.2%
3259514 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 55.0 4.65e-01 100.0% 62.5%
3223257 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.62 56.0 4.66e-01 100.0% 70.8%
4928853 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.61 53.0 4.54e-01 100.0% 96.5%
3718060 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 54.0 4.57e-01 100.0% 72.2%
3699577 220.1.1.236 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_27 0.59 53.0 4.56e-01 100.0% 67.3%
3450701 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.59 53.0 3.24e-01 100.0% 34.0%
4033537 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.58 41.0 2.93e-01 100.0% 23.0%
2323730 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.58 50.0 4.25e-01 100.0% 94.4%
3819664 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.58 52.0 3.21e-01 100.0% 33.4%
4483985 9.7.1.1 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.58 51.0 4.72e-01 98.6% 92.2%
4669519 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 50.0 4.09e-01 98.6% 52.6%
3198655 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 42.0 4.36e-01 90.0% 86.2%
3282158 211.1.1.11 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_6 0.57 49.0 4.20e-01 98.6% 97.4%
4680137 220.1.1.154 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.57 50.0 3.85e-01 100.0% 46.9%
4957336 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 50.0 3.11e-01 100.0% 17.3%
3606549 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.55 46.0 4.10e-01 98.6% 98.2%
3264377 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 49.0 4.11e-01 100.0% 70.8%
3279092 223.3.1.16 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Asparaginase_II 0.55 47.0 3.67e-01 100.0% 60.6%
3713703 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 49.0 4.15e-01 100.0% 66.1%
3259014 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.54 42.0 2.92e-01 85.7% 97.3%
3194942 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 41.0 3.35e-01 87.1% 77.9%
3623120 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 2.94e-01 72.9% 88.7%
4174949 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.54 43.0 3.95e-01 100.0% 66.7%
3594856 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 48.0 4.12e-01 100.0% 65.5%
3786604 220.1.1.244 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31261 0.54 46.0 3.86e-01 100.0% 54.4%
5075739 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 48.0 3.93e-01 100.0% 56.8%
3788007 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 47.0 2.82e-01 100.0% 94.2%
4944411 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 3.72e-01 98.6% 58.5%
3303119 9.23.1.4 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.52 46.0 3.75e-01 100.0% 91.8%
5051461 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 3.48e-01 100.0% 48.8%
4251107 321.1.1.6 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase 0.52 40.0 2.59e-01 90.0% 52.1%
3580198 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 39.0 3.04e-01 85.7% 94.3%
4948951 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 43.0 3.75e-01 100.0% 95.0%
3254788 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 44.0 3.53e-01 100.0% 47.6%
4000519 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 42.0 3.86e-01 95.7% 96.8%
5051398 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 3.74e-01 100.0% 60.8%
3927907 223.2.1.16 a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.50 44.0 4.16e-01 97.1% 87.1%
5030082 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 38.0 3.00e-01 85.7% 49.7%