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MH155870.1__AWN05236.1__SEA_IBANTIK_11__00011

Bact-Vir

MH155870.1__AWN05236.1__SEA_IBANTIK_11__00011

Identity

Accession:
MH155870 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ibantikvirus› Streptomyces_phage_Ibantik

TaxID: 2182397

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-58
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 46.0 3.80e-01 100.0% 42.9%
3pl5A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.62 52.0 4.07e-01 100.0% 43.8%
4ic6C01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 36.0 2.96e-01 72.7% 30.9%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.77e-01 87.3% 33.4%
1s3aA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 43.0 3.88e-01 100.0% 98.8%
2esvD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.04e-01 78.2% 70.6%
1ayaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 43.0 3.62e-01 100.0% 54.5%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 40.0 3.50e-01 100.0% 63.7%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 41.0 3.47e-01 96.4% 89.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3235379 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.78 44.0 4.27e-01 89.1% 50.0%
3220397 376.1.6.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.78 49.0 4.60e-01 100.0% 53.8%
3323008 376.1.4.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.78 46.0 4.53e-01 96.4% 55.0%
3473267 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.75 49.0 4.98e-01 100.0% 69.8%
3623529 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 45.0 5.07e-01 100.0% 85.0%
3796896 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 46.0 5.01e-01 98.2% 77.8%
4163716 386.1.1.6 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.73 48.0 4.84e-01 100.0% 67.3%
3936249 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 45.0 5.18e-01 98.2% 87.5%
3584648 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.68 51.0 3.84e-01 96.4% 32.1%
3416458 386.1.1.259 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.67 46.0 5.01e-01 100.0% 88.9%
4621658 241.4.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.67 48.0 3.64e-01 96.4% 30.3%
4051690 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.66 51.0 4.20e-01 100.0% 44.8%
3744650 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 43.0 4.01e-01 100.0% 52.9%
3610060 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.66 43.0 3.75e-01 98.2% 43.5%
4484723 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.65 50.0 4.16e-01 100.0% 45.2%
4403811 241.4.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.65 52.0 4.11e-01 96.4% 41.7%
4461189 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.64 54.0 4.23e-01 100.0% 49.6%
3921980 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 45.0 2.69e-01 96.4% 24.6%
3936760 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.55 42.0 3.70e-01 92.7% 54.4%
5079140 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 3.68e-01 94.5% 89.3%
5079181 309.1.2.1 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.54 42.0 3.07e-01 100.0% 30.0%
3444378 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.53 41.0 4.24e-01 100.0% 92.0%
3212960 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 42.0 3.51e-01 100.0% 76.5%
3485485 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 41.0 3.37e-01 100.0% 51.7%
3662757 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 37.0 2.69e-01 87.3% 55.6%