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MH183162.1__AWN07726.1__PBI_HENDRIX_55__00055
Bact-VirMH183162.1__AWN07726.1__PBI_HENDRIX_55__00055
Identity
- Accession:
- MH183162 ↗
- Kingdom:
- phage
Quality
59.8
mean pLDDT
Taxonomy
TaxID: 2182341
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-210
Domain cluster:
rep: OL597546.1__UUB23297.1__X__00001__D24-147
D2
high
residues 247-361
D3
high
residues 814-872
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4egwA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.74 | 52.0 | 4.08e-01 | 83.1% | 37.0% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.70 | 53.0 | 5.27e-01 | 89.8% | 77.0% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 44.0 | 4.51e-01 | 83.1% | 69.0% |
| 4dxwB01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.67 | 53.0 | 4.31e-01 | 89.8% | 46.8% |
| 2e9xD01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 49.0 | 3.71e-01 | 79.7% | 34.3% |
| 3cuxA02 | 1.20.1220.12 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III | 0.65 | 53.0 | 4.15e-01 | 88.1% | 53.7% |
| 2aboA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.65 | 44.0 | 3.36e-01 | 78.0% | 31.3% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 48.0 | 4.53e-01 | 81.4% | 92.8% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 42.0 | 3.95e-01 | 71.2% | 59.2% |
| 1b7eA02 | 1.10.740.10 | Mainly Alpha › Orthogonal Bundle › Transferase Inhibitor Protein From Tn5; Chain A, domain2 › Transferase Inhibitor Protein From Tn5; Chain | 0.60 | 49.0 | 3.85e-01 | 94.9% | 42.9% |
| 3d0cB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 48.0 | 3.07e-01 | 89.8% | 45.0% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.58 | 47.0 | 4.02e-01 | 98.3% | 54.1% |
| 3na8A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 44.0 | 2.88e-01 | 84.7% | 43.6% |
| 1x9zA01 | 3.30.1540.20 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain | 0.57 | 36.0 | 3.08e-01 | 98.3% | 40.9% |
| 1khcA02 | 1.10.720.50 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain | 0.56 | 42.0 | 3.99e-01 | 79.7% | 97.1% |
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.56 | 48.0 | 3.70e-01 | 98.3% | 42.3% |
| 3hgkE00 | 1.20.1280.110 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.54 | 42.0 | 3.82e-01 | 83.1% | 74.0% |
| 1kewA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.54 | 38.0 | 3.43e-01 | 93.2% | 53.6% |
| 2h8pC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 37.0 | 3.81e-01 | 72.9% | 80.7% |
| 1gaxA02 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.52 | 43.0 | 3.00e-01 | 96.6% | 48.5% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 40.0 | 3.24e-01 | 84.7% | 94.7% |
| 1auoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 46.0 | 3.10e-01 | 100.0% | 47.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839778 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.73 | 54.0 | 5.39e-01 | 83.1% | 76.7% |
| None | — | 0.69 | 51.0 | 3.44e-01 | 88.1% | 22.4% | |
| 3397045 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 59.0 | 4.36e-01 | 93.2% | 79.3% |
| 5014330 | 148.1.3.402 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook | 0.69 | 53.0 | 4.29e-01 | 83.1% | 52.7% |
| 4096162 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.69 | 50.0 | 4.11e-01 | 76.3% | 45.0% |
| None | — | 0.67 | 48.0 | 3.39e-01 | 83.1% | 25.0% | |
| 3951222 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.67 | 52.0 | 4.89e-01 | 88.1% | 70.0% |
| 3171363 | 605.8.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › PF27894 | 0.65 | 52.0 | 5.37e-01 | 88.1% | 92.7% |
| 3391350 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.64 | 53.0 | 4.07e-01 | 89.8% | 68.5% |
| None | — | 0.64 | 45.0 | 3.40e-01 | 93.2% | 29.0% | |
| 3213440 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.63 | 51.0 | 3.67e-01 | 89.8% | 31.8% |
| 4886110 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.62 | 51.0 | 3.52e-01 | 91.5% | 67.8% |
| 3194789 | 3682.1.1.0 ↗ | alpha duplicates or obligate multimers › IcmQ dimerization domain › IcmQ dimerization domain › IcmQ dimerization domain | 0.62 | 53.0 | 4.24e-01 | 100.0% | 51.2% |
| 3441014 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.62 | 53.0 | 2.99e-01 | 100.0% | 56.1% |
| 3232414 | 632.7.1.25 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 | 0.61 | 49.0 | 4.54e-01 | 88.1% | 78.7% |
| None | — | 0.61 | 50.0 | 3.47e-01 | 89.8% | 59.5% | |
| 4163118 | 2002.1.1.29 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS | 0.61 | 49.0 | 3.23e-01 | 96.6% | 53.3% |
| 4396629 | 103.4.1.16 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › AgrB | 0.60 | 51.0 | 3.76e-01 | 96.6% | 80.0% |
| 3192841 | 109.4.1.182 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS,DCB | 0.60 | 48.0 | 3.00e-01 | 93.2% | 33.9% |
| 3485048 | 7579.1.1.83 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lip_C | 0.59 | 51.0 | 3.04e-01 | 94.9% | 25.2% |
| 5029847 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.58 | 44.0 | 4.09e-01 | 84.7% | 64.0% |
| 4579385 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.57 | 44.0 | 3.08e-01 | 84.7% | 59.5% |
| 4540195 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 42.0 | 3.54e-01 | 94.9% | 47.0% |
| 4275434 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.55 | 46.0 | 3.30e-01 | 91.5% | 32.9% |
| 4996409 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.53 | 43.0 | 2.86e-01 | 89.8% | 22.0% |
| 3911035 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.52 | 45.0 | 3.36e-01 | 96.6% | 53.5% |
| None | — | 0.50 | 40.0 | 2.89e-01 | 94.9% | 37.0% |
D4
high
residues 955-1109
Domain cluster:
rep: OR521081.1__WNO27886.1__SEA_HALO3_17__00017__D18-170
D5
medium
residues 707-784