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MH183162.1__AWN07758.1__PBI_HENDRIX_87__00087

Bact-Vir

MH183162.1__AWN07758.1__PBI_HENDRIX_87__00087

Identity

Accession:
MH183162 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-79
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 48.0 4.77e-01 80.4% 69.2%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 4.89e-01 100.0% 76.5%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.67e-01 100.0% 73.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 45.0 4.68e-01 100.0% 84.8%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.93e-01 100.0% 86.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 4.87e-01 98.0% 89.4%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 42.0 4.03e-01 80.4% 61.0%
1mk1A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 46.0 3.17e-01 82.4% 94.7%
3kflA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.61 45.0 3.46e-01 100.0% 33.9%
3d7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 48.0 4.23e-01 90.2% 91.4%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 48.0 4.88e-01 100.0% 88.2%
4euuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 52.0 4.43e-01 100.0% 87.6%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.49e-01 100.0% 82.7%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 4.27e-01 84.3% 90.5%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 50.0 3.94e-01 100.0% 70.2%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 41.0 4.37e-01 92.2% 97.4%
4r2xD00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.58 45.0 2.98e-01 90.2% 29.3%
6yllA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 40.0 3.49e-01 74.5% 76.8%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.57 39.0 2.37e-01 70.6% 42.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.02e-01 100.0% 59.5%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 3.58e-01 94.1% 47.8%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 41.0 4.18e-01 80.4% 91.7%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 45.0 3.70e-01 100.0% 68.2%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 41.0 2.89e-01 82.4% 29.8%
1lwjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 38.0 3.86e-01 74.5% 98.0%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 47.0 3.94e-01 100.0% 73.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.17e-01 100.0% 78.9%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 3.49e-01 100.0% 81.5%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 3.35e-01 100.0% 71.7%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 38.0 2.82e-01 74.5% 85.4%
4c26A00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.54 43.0 4.00e-01 98.0% 71.2%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 47.0 4.53e-01 98.0% 91.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.12e-01 100.0% 71.2%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 43.0 4.05e-01 100.0% 75.8%
3q7yA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.42e-01 96.1% 49.2%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.24e-01 100.0% 89.3%
1u0lA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 4.07e-01 94.1% 92.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.03e-01 100.0% 80.0%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 43.0 2.88e-01 100.0% 81.1%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 35.0 2.69e-01 70.6% 32.1%
3qpbF00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 43.0 2.86e-01 100.0% 82.5%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.52 41.0 4.09e-01 98.0% 94.2%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 43.0 3.99e-01 100.0% 76.1%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 42.0 3.84e-01 100.0% 78.4%
2rdgA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 40.0 3.68e-01 94.1% 91.5%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028956 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.76 50.0 5.62e-01 80.4% 100.0%
5032251 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 51.0 5.30e-01 78.4% 80.0%
5009210 4042.1.1.3 a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_5 0.71 53.0 3.62e-01 80.4% 23.3%
4675029 4042.1.1.2 a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 0.71 53.0 3.62e-01 80.4% 23.3%
3353115 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 55.0 3.52e-01 88.2% 35.0%
4981763 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 48.0 5.18e-01 78.4% 92.5%
5013926 375.8.1.8 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › CPxCG_zf 0.69 45.0 4.98e-01 76.5% 100.0%
3332951 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.68 56.0 3.40e-01 94.1% 25.9%
3712249 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.67 47.0 2.67e-01 72.5% 77.2%
4952887 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.59e-01 100.0% 69.1%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.66 48.0 4.40e-01 100.0% 58.6%
2893010 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.65 46.0 4.55e-01 80.4% 70.4%
3510526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.84e-01 100.0% 76.4%
3928190 2003.1.4.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 0.65 47.0 2.96e-01 100.0% 13.7%
3243842 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 47.0 3.71e-01 78.4% 75.5%
5079023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.93e-01 100.0% 86.7%
None 0.65 43.0 2.61e-01 70.6% 10.5%
5033222 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.64 51.0 4.06e-01 88.2% 74.3%
3255474 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.64 54.0 3.35e-01 98.0% 26.8%
4463837 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.64 48.0 3.84e-01 82.4% 41.0%
5025079 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.40e-01 100.0% 69.1%
3452886 145.1.1.60 alpha arrays › F-box domain › F-box domain › F-box domain › Beta-prop_KIB1-4 0.63 44.0 3.22e-01 94.1% 26.0%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 47.0 4.31e-01 100.0% 61.5%
3611012 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.63 46.0 2.65e-01 76.5% 82.5%
3258369 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 43.0 4.62e-01 82.4% 100.0%
3926998 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 48.0 4.28e-01 100.0% 56.2%
1140051 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 47.0 4.81e-01 100.0% 87.8%
None 0.62 46.0 2.87e-01 88.2% 13.8%
3721794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.52e-01 100.0% 70.0%
3597793 5094.1.1.0 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like 0.61 43.0 3.28e-01 76.5% 37.0%
3474715 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.09e-01 100.0% 60.0%
4946165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.28e-01 100.0% 70.9%
3621893 376.1.1.75 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Pellino_RING 0.60 48.0 4.22e-01 100.0% 58.7%
4029392 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.60 43.0 3.02e-01 100.0% 21.6%
3701625 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.59 41.0 4.31e-01 78.4% 80.0%
4429356 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.59 45.0 4.18e-01 84.3% 87.7%
2575643 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.59 42.0 3.84e-01 100.0% 56.5%
3253491 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 50.0 4.70e-01 100.0% 89.2%
4998697 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 43.0 4.13e-01 80.4% 66.7%
4951170 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.59 43.0 4.01e-01 84.3% 95.7%
4119533 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.58 44.0 4.22e-01 82.4% 93.3%
3960458 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.58 42.0 2.98e-01 80.4% 34.9%
4425795 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.58 43.0 4.04e-01 82.4% 87.7%
4475796 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 42.0 4.18e-01 80.4% 96.4%
4951171 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.57 42.0 3.91e-01 84.3% 94.3%
3858433 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.57 49.0 3.11e-01 100.0% 27.9%
3477189 375.14.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.57 40.0 4.16e-01 100.0% 91.1%
3229548 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 41.0 4.29e-01 100.0% 91.1%
4176687 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.57 43.0 4.05e-01 84.3% 89.2%
5011618 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 3.17e-01 84.3% 80.7%
5024226 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.56 37.0 3.92e-01 78.4% 77.8%
4478971 4.1.1.174 beta barrels › SH3 › SH3 › SH3 › DUF951 0.56 42.0 3.91e-01 100.0% 64.6%
5001065 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.56 49.0 3.00e-01 100.0% 25.0%
3177203 375.14.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.56 40.0 4.10e-01 100.0% 91.1%
5026284 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.56 44.0 3.82e-01 100.0% 83.2%
4352991 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 47.0 4.51e-01 94.1% 90.0%
5078789 4333.1.1.8 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › N6_Mtase 0.55 47.0 2.70e-01 100.0% 13.4%
4999847 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.55 48.0 2.95e-01 100.0% 25.8%
5065152 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.55 48.0 2.95e-01 100.0% 24.2%
4932460 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.55 47.0 4.42e-01 96.1% 90.5%
959119 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.54 43.0 4.25e-01 100.0% 83.3%
4032291 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.54 40.0 3.75e-01 82.4% 86.2%
4404324 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 48.0 4.04e-01 100.0% 72.9%
4056117 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 38.0 3.61e-01 80.4% 67.7%
4250402 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 4.04e-01 82.4% 93.3%
3280391 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 40.0 3.70e-01 88.2% 88.6%
4935682 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 46.0 4.53e-01 100.0% 98.2%
4994957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.69e-01 100.0% 81.8%
3354326 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.51 34.0 3.37e-01 100.0% 63.3%
3323471 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.51 34.0 3.35e-01 78.4% 63.6%
3928760 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 40.0 2.53e-01 96.1% 24.2%
4187924 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.50 37.0 2.85e-01 80.4% 64.2%