←Back to structures
MH191395.1__AWN08556.1__XcP1_054__00054
Bact-VirMH191395.1__AWN08556.1__XcP1_054__00054
Identity
- Accession:
- MH191395 ↗
- Kingdom:
- phage
Quality
59.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Lindbergviridae›
Carpasinavirus›
Xanthomonas_phage_XcP1
TaxID: 2785027
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 44-102
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kmfA01 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.62 | 45.0 | 3.89e-01 | 81.4% | 91.2% |
| 1l9lA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.59 | 40.0 | 3.73e-01 | 71.2% | 86.5% |
| 1aa7A02 | 1.10.10.180 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 | 0.57 | 39.0 | 3.63e-01 | 72.9% | 57.7% |
| 1hbkA00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.55 | 41.0 | 3.68e-01 | 84.7% | 67.4% |
| 4nq1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 45.0 | 2.86e-01 | 93.2% | 19.0% |
| 1u5tB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 43.0 | 3.98e-01 | 98.3% | 98.8% |
| 4ks9A01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.53 | 44.0 | 3.48e-01 | 94.9% | 43.7% |
| 1m4rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 43.0 | 3.34e-01 | 91.5% | 73.8% |
| 3f1sA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.53 | 45.0 | 3.08e-01 | 100.0% | 69.4% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 37.0 | 3.26e-01 | 74.6% | 64.3% |
| 1hkgA03 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.52 | 42.0 | 2.88e-01 | 98.3% | 42.6% |
| 3m6jA01 | 1.20.1260.40 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.51 | 47.0 | 3.68e-01 | 100.0% | 55.6% |
| 1x6mC00 | 3.90.1590.10 | Alpha Beta › Alpha-Beta Complex › glutathione-dependent formaldehyde- activating enzyme (gfa) › glutathione-dependent formaldehyde- activating enzyme (gfa) | 0.50 | 42.0 | 3.00e-01 | 96.6% | 88.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3689529 | 3924.1.1.1 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2 | 0.63 | 43.0 | 2.95e-01 | 71.2% | 27.4% |
| 3336508 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.57 | 45.0 | 3.21e-01 | 100.0% | 28.3% |
| 3741521 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.57 | 42.0 | 3.34e-01 | 79.7% | 56.0% |
| 3742891 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.57 | 43.0 | 3.22e-01 | 100.0% | 33.1% |
| 3729872 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.55 | 44.0 | 3.15e-01 | 98.3% | 28.8% |
| 3827125 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 43.0 | 3.06e-01 | 100.0% | 28.3% |
| 3786815 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 41.0 | 3.74e-01 | 86.4% | 85.9% |
| 3771668 | 4133.1.1.0 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like | 0.54 | 45.0 | 4.02e-01 | 100.0% | 64.4% |
| 5027755 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 44.0 | 4.06e-01 | 100.0% | 80.0% |
| 4981204 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 3.83e-01 | 100.0% | 96.6% |
| 3337263 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.51 | 40.0 | 3.55e-01 | 89.8% | 62.2% |