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MH221129.1__AXF51077.1__MLDJOKPK_00059__00059

Bact-Vir

MH221129.1__AXF51077.1__MLDJOKPK_00059__00059

Identity

Accession:
MH221129 ↗
Kingdom:
phage

Quality

48.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Seoulvirus› Salmonella_phage_SPAsTU

TaxID: 2136797

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-127
PDB
D2 high residues 141-203
PDB
Domain cluster: rep: MW812338.1__QVW54954.1__pEaSNUABM4_00201__00189__D175-229
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v8vA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.84 50.0 3.36e-01 82.5% 17.9%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.77 53.0 5.18e-01 82.5% 65.7%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 49.0 4.36e-01 82.5% 49.5%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.70 52.0 4.73e-01 79.4% 65.1%
3mggB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 56.0 4.20e-01 100.0% 34.8%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 48.0 4.15e-01 87.3% 47.6%
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.67 45.0 4.27e-01 82.5% 58.7%
2a2cA02 3.30.70.3170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 51.0 4.58e-01 82.5% 65.5%
3oreA01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.64 46.0 4.56e-01 82.5% 72.7%
3ssmC02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 55.0 3.88e-01 100.0% 35.5%
3cjsA00 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.63 39.0 4.03e-01 82.5% 65.5%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 50.0 4.53e-01 95.2% 63.9%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 46.0 3.99e-01 88.9% 48.1%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 42.0 3.86e-01 82.5% 50.6%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 43.0 4.23e-01 77.8% 66.7%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 42.0 4.04e-01 77.8% 60.0%
3h0dA01 3.30.56.130 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Transcriptional regulator CtsR, winged HTH domain 0.61 52.0 5.03e-01 100.0% 93.0%
1ejdA01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.61 45.0 3.17e-01 100.0% 24.6%
1xxaC00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 47.0 4.46e-01 96.8% 71.2%
2fyxA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.60 45.0 3.62e-01 82.5% 43.8%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.60 44.0 3.56e-01 79.4% 41.9%
3pyfA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.59 46.0 3.52e-01 82.5% 86.1%
2cxiA01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.59 42.0 3.98e-01 77.8% 62.0%
2a6mA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.58 43.0 3.50e-01 82.5% 43.1%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.98e-01 100.0% 62.2%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.83e-01 100.0% 59.3%
3t66A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 48.0 3.27e-01 100.0% 32.9%
3fzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 47.0 3.42e-01 100.0% 33.7%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.76e-01 100.0% 59.1%
1xviA02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.54 44.0 3.90e-01 90.5% 93.6%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 41.0 3.08e-01 82.5% 39.0%
3cu7A12 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.54 48.0 3.72e-01 100.0% 45.7%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.39e-01 100.0% 41.4%
1konA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.53 38.0 3.66e-01 92.1% 65.3%
4y66F01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.99e-01 100.0% 84.8%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.92e-01 100.0% 81.2%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.52 42.0 3.88e-01 95.2% 67.9%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 4.08e-01 100.0% 89.4%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.89e-01 100.0% 72.0%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.52 40.0 3.84e-01 84.1% 75.3%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 38.0 2.58e-01 79.4% 88.5%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.97e-01 100.0% 90.3%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 44.0 4.01e-01 100.0% 80.5%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.34e-01 100.0% 43.3%
1kgdA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.51 36.0 3.67e-01 81.0% 78.3%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.55e-01 98.4% 54.8%
4ab7H02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 44.0 3.39e-01 100.0% 84.2%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 4.02e-01 100.0% 85.3%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.52e-01 100.0% 60.2%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.87e-01 100.0% 69.8%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.30e-01 98.4% 61.0%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.50 42.0 3.66e-01 96.8% 66.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2074659 304.120.1.5 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st 0.83 51.0 5.18e-01 82.5% 63.9%
4115093 304.120.1.5 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st 0.83 50.0 5.11e-01 82.5% 63.3%
4661896 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.79 48.0 4.83e-01 82.5% 60.0%
5000375 328.4.1.1 ↗ a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.68 57.0 4.99e-01 100.0% 61.0%
3967558 306.6.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.67 53.0 4.73e-01 93.7% 62.4%
4568363 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.64 49.0 3.86e-01 81.0% 78.4%
1179696 304.138.1.0 ↗ a+b two layers › Alpha-beta plaits 0.64 40.0 3.92e-01 82.5% 56.7%
4965997 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.64 57.0 5.08e-01 100.0% 74.4%
3588365 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.70e-01 100.0% 68.2%
3988081 306.2.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor › Arg_repressor_C 0.63 51.0 4.76e-01 100.0% 70.5%
3587571 101.1.2.93 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Mga 0.62 50.0 4.93e-01 100.0% 82.9%
4428935 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.62 47.0 3.86e-01 81.0% 86.4%
3699569 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.71e-01 100.0% 70.6%
5082595 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.61 44.0 4.36e-01 79.4% 73.8%
3495499 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.61 46.0 2.96e-01 82.5% 36.7%
3964348 304.28.1.3 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 0.60 43.0 4.11e-01 76.2% 65.3%
5053540 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.60 52.0 3.62e-01 100.0% 46.4%
4100251 306.1.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB 0.59 49.0 4.32e-01 100.0% 63.3%
4958614 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 51.0 3.69e-01 100.0% 41.6%
3503286 306.1.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB 0.58 48.0 4.58e-01 100.0% 76.0%
4011761 304.7.1.3 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Pro-kuma_activ 0.58 53.0 3.89e-01 100.0% 62.5%
3946500 306.1.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB 0.58 48.0 4.42e-01 100.0% 71.2%
3644483 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.58 48.0 3.22e-01 100.0% 22.3%
169596 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.57 43.0 3.88e-01 100.0% 55.7%
3320712 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.56 48.0 3.59e-01 100.0% 35.4%
4033416 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.56 40.0 3.91e-01 92.1% 68.6%
3505845 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.53 44.0 3.94e-01 100.0% 67.0%
3600926 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 3.79e-01 100.0% 55.2%
5025962 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 43.0 4.03e-01 100.0% 71.2%
5021499 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.53 41.0 3.81e-01 100.0% 65.9%
3285249 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 41.0 3.67e-01 100.0% 57.0%
5050343 101.1.2.891 ↗ alpha arrays › HTH › HTH › winged helix domain › UBA_3 0.53 41.0 4.00e-01 100.0% 76.0%
4997405 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.34e-01 100.0% 42.1%
5028427 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 39.0 3.46e-01 85.7% 58.1%
5031076 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 42.0 3.54e-01 92.1% 51.3%
4977903 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 4.12e-01 100.0% 87.5%
4068860 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.52 41.0 3.50e-01 100.0% 49.2%
2601 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.52 41.0 3.89e-01 100.0% 72.0%
3257129 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.52 43.0 3.64e-01 100.0% 55.0%
3501875 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.60e-01 100.0% 54.0%
5003316 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.52 40.0 3.60e-01 100.0% 58.0%
3883014 101.1.2.490 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.52 43.0 4.09e-01 100.0% 80.0%
3671068 101.1.2.82 ↗ alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.52 39.0 3.48e-01 96.8% 55.0%
1147791 101.1.2.87 ↗ alpha arrays › HTH › HTH › winged helix domain › PaaX 0.52 43.0 3.81e-01 100.0% 63.1%
3782579 101.1.2.82 ↗ alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.51 39.0 3.23e-01 100.0% 41.5%
5029366 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.83e-01 100.0% 69.4%
3271024 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.51 42.0 3.06e-01 93.7% 46.3%
4979180 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.51 42.0 3.44e-01 100.0% 48.0%
5036590 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.60e-01 100.0% 53.0%
5012106 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.51 41.0 3.35e-01 100.0% 44.4%
5024008 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.79e-01 100.0% 73.8%
3494959 11.1.5.27 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.51 43.0 3.29e-01 100.0% 45.5%
4939871 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.51 41.0 3.60e-01 100.0% 58.1%
4983659 101.1.2.650 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.50 39.0 3.54e-01 100.0% 60.2%
4948443 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.50 44.0 3.37e-01 100.0% 82.7%
4952681 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 42.0 3.96e-01 100.0% 80.0%
4956853 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.60e-01 100.0% 65.9%