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MH248138.1__AWY08301.1__Alexandra_21__00021

Bact-Vir

MH248138.1__AWY08301.1__Alexandra_21__00021

Identity

Accession:
MH248138 ↗
Kingdom:
phage

Quality

94.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alexandravirus› Erwinia_phage_vB_EamM_Alexandra

TaxID: 2201424

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-82
PDB
Domain cluster: rep: NC_048654.1__YP_009832427.1__HWB09_gp094__00098__D11-80
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.61 28.0 2.64e-01 92.8% 33.7%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 42.0 3.94e-01 73.9% 87.2%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.59 41.0 3.51e-01 73.9% 98.3%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 42.0 3.97e-01 78.3% 89.8%
2ztbA03 2.60.40.3040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 36.0 4.09e-01 91.3% 95.8%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.44e-01 82.6% 93.8%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 45.0 3.14e-01 100.0% 82.8%
4d4iA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 43.0 2.76e-01 92.8% 75.6%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 35.0 3.11e-01 73.9% 46.5%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 39.0 3.22e-01 76.8% 100.0%
2zgyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 37.0 2.81e-01 73.9% 73.9%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.21e-01 100.0% 64.2%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.22e-01 100.0% 63.1%
3ni2A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 44.0 2.74e-01 94.2% 80.0%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 35.0 3.03e-01 72.5% 43.9%
4dg8A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 42.0 2.69e-01 92.8% 76.9%
3vnrA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 42.0 2.72e-01 95.7% 75.8%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 38.0 2.36e-01 78.3% 42.7%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 40.0 3.45e-01 84.1% 95.5%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.52 39.0 2.87e-01 82.6% 80.0%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 39.0 3.93e-01 84.1% 87.0%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.93e-01 98.6% 97.5%
1n02A00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 40.0 3.54e-01 85.5% 96.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960747 305.2.1.1 ↗ a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.69 50.0 4.48e-01 76.8% 97.9%
5044389 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.66 35.0 4.02e-01 72.5% 70.0%
5040236 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.65 46.0 3.09e-01 73.9% 69.8%
4099964 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.60 41.0 4.21e-01 71.0% 80.0%
4068978 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 41.0 4.04e-01 72.5% 68.0%
4999777 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.58 40.0 2.77e-01 72.5% 71.3%
4230153 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 40.0 3.76e-01 92.8% 58.8%
3165403 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.57 39.0 4.06e-01 72.5% 78.5%
3586367 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.57 45.0 2.96e-01 88.4% 95.0%
4127839 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 39.0 3.89e-01 72.5% 68.0%
3385663 7547.1.1.1 ↗ a/b three-layered sandwiches › Hypothetical protein TT1679 › Hypothetical protein TT1679 › Hypothetical protein TT1679 › Antibiotic_NAT 0.57 35.0 2.40e-01 85.5% 16.5%
4421680 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 39.0 3.76e-01 92.8% 62.5%
5065013 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 38.0 2.95e-01 71.0% 88.1%
4937917 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 38.0 4.27e-01 89.9% 98.0%
3740252 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.56 46.0 3.97e-01 94.2% 82.6%
5013584 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 45.0 4.57e-01 91.3% 98.6%
3608162 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 46.0 3.60e-01 98.6% 80.0%
4465073 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 46.0 4.12e-01 97.1% 92.3%
3252404 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.54 44.0 4.06e-01 94.2% 87.4%
3599238 207.4.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.53 40.0 3.01e-01 79.7% 50.0%
368907 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 39.0 3.21e-01 76.8% 99.2%
3995113 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.52 42.0 3.83e-01 91.3% 87.4%
4215372 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 37.0 3.29e-01 76.8% 82.9%
3816490 1.1.1.28 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.52 41.0 2.70e-01 92.8% 79.7%
1178369 705.1.1.1 ↗ beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.51 34.0 3.91e-01 91.3% 98.0%
3277756 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.50 40.0 3.30e-01 89.9% 89.6%