←Back to structures

MH268168.1__AWY10457.1__PFP1_07__00007

Bact-Vir

MH268168.1__AWY10457.1__PFP1_07__00007

Identity

Accession:
MH268168 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Pfluvirus› Pseudomonas_phage_PFP1

TaxID: 2201462

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-95
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.75 68.0 6.67e-01 100.0% 92.1%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.72 63.0 6.09e-01 100.0% 85.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 39.0 3.46e-01 75.5% 86.4%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.54 26.0 2.89e-01 76.6% 53.2%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.10e-01 84.0% 47.1%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.50e-01 87.2% 64.3%
1lhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 38.0 2.75e-01 81.9% 44.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033119 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.82 60.0 5.91e-01 94.7% 71.0%
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.78 62.0 5.97e-01 100.0% 75.2%
3798287 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.77 70.0 7.02e-01 100.0% 97.9%
3529465 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.76 69.0 6.69e-01 100.0% 88.6%
3888996 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.74 65.0 6.51e-01 100.0% 95.8%
3932937 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.73 64.0 6.42e-01 100.0% 95.8%
4003595 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.72 64.0 5.72e-01 100.0% 70.5%
3893451 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.72 64.0 6.16e-01 100.0% 86.7%
3480621 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 63.0 6.33e-01 100.0% 95.8%
3505855 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 54.0 5.82e-01 95.7% 100.0%
3230106 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 60.0 5.93e-01 100.0% 95.0%
3731164 101.1.9.37 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › CRC_subunit 0.65 54.0 5.07e-01 94.7% 74.6%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.65 59.0 5.00e-01 98.9% 63.3%
3394686 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 53.0 4.97e-01 92.6% 87.3%
3214527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 56.0 5.09e-01 100.0% 80.0%
3544582 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.62 37.0 3.85e-01 94.7% 62.2%
5055629 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.60 32.0 3.91e-01 93.6% 81.7%
3775031 108.1.1.20 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.55 39.0 4.22e-01 95.7% 92.0%
4019104 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.55 47.0 2.91e-01 93.6% 31.2%
3901666 108.1.1.20 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.55 39.0 3.75e-01 95.7% 63.6%
3282962 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.54 36.0 3.23e-01 88.3% 46.4%
5004231 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.53 36.0 3.68e-01 75.5% 69.5%
3167236 148.1.3.31 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM4_WHD 0.53 32.0 3.34e-01 76.6% 64.7%
3484511 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 45.0 4.14e-01 93.6% 76.7%
5003128 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 32.0 3.17e-01 74.5% 56.0%
3928777 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.52 37.0 3.53e-01 94.7% 63.6%
5047402 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.51 38.0 3.68e-01 88.3% 69.1%
4966530 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.50 25.0 2.91e-01 94.7% 64.3%
D2 high residues 172-262
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 41.0 4.15e-01 95.6% 68.8%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.60 41.0 4.36e-01 92.3% 83.1%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 4.13e-01 92.3% 76.2%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 4.04e-01 92.3% 70.8%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.75e-01 95.6% 61.5%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 35.0 3.67e-01 82.4% 67.9%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 34.0 3.01e-01 82.4% 41.0%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 35.0 3.01e-01 82.4% 39.0%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 33.0 3.49e-01 80.2% 64.3%
7k98E03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.55 39.0 4.41e-01 93.4% 100.0%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.54 41.0 3.24e-01 80.2% 80.9%
1oaoC03 3.30.1650.10 Alpha Beta › 2-Layer Sandwich › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3 › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3 0.54 46.0 3.80e-01 96.7% 66.5%
5x9vA01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.54 42.0 3.11e-01 100.0% 31.4%
2pffB05 3.30.70.2430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 34.0 3.87e-01 91.2% 96.7%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.53 46.0 3.49e-01 100.0% 67.0%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 38.0 2.86e-01 79.1% 81.9%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.69e-01 90.1% 83.3%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 35.0 2.81e-01 72.5% 80.8%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 37.0 3.35e-01 90.1% 52.6%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 41.0 3.03e-01 100.0% 30.5%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.49e-01 83.5% 68.5%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.51 43.0 4.04e-01 97.8% 78.8%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 40.0 3.00e-01 98.9% 31.2%
3kkfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.68e-01 91.2% 70.5%
6b4rA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 42.0 3.04e-01 93.4% 59.1%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.50 38.0 3.08e-01 84.6% 94.4%
2f1rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 3.65e-01 95.6% 95.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3887526 304.24.1.18 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › TYW2_N 0.60 41.0 4.23e-01 94.5% 74.1%
3492262 327.19.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › Mlh1_C 0.60 49.0 4.83e-01 89.0% 91.0%
3223761 320.2.1.0 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain 0.58 38.0 3.77e-01 87.9% 62.8%
5044182 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 34.0 3.55e-01 79.1% 62.4%
3727540 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.57 37.0 3.12e-01 82.4% 37.7%
3785892 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.56 42.0 3.14e-01 80.2% 58.8%
167429 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.55 35.0 3.01e-01 82.4% 39.0%
4944787 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 40.0 4.22e-01 92.3% 88.7%
5012277 101.1.2.904 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_38 0.54 34.0 3.70e-01 82.4% 77.3%
3516510 304.48.1.6 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.54 45.0 4.16e-01 92.3% 78.2%
3260912 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.53 44.0 3.23e-01 100.0% 32.2%
3981752 829.1.1.1 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB 0.52 42.0 3.80e-01 90.1% 64.6%
3596210 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.52 45.0 2.74e-01 98.9% 31.2%
3908432 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.52 38.0 2.59e-01 80.2% 73.9%
3265165 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.52 43.0 3.11e-01 100.0% 30.7%
3290009 4107.1.1.1 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.52 40.0 3.23e-01 82.4% 82.4%
5057313 3352.1.1.2 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 0.51 44.0 2.98e-01 100.0% 68.3%
4282238 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 34.0 2.06e-01 97.8% 8.3%
3733950 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.51 42.0 2.98e-01 98.9% 28.6%
3864427 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.51 43.0 3.10e-01 94.5% 40.4%
3488729 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.51 38.0 2.99e-01 82.4% 55.8%
4944224 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.50 39.0 3.02e-01 84.6% 93.0%