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MH271295.1__AWY04697.1__PBI_EBERT_28__00028
Bact-VirMH271295.1__AWY04697.1__PBI_EBERT_28__00028
Identity
- Accession:
- MH271295 ↗
- Kingdom:
- phage
Quality
81.6
mean pLDDT
Taxonomy
TaxID: 2201426
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 47-101
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.76 | 54.0 | 5.95e-01 | 85.5% | 97.7% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.72 | 58.0 | 5.84e-01 | 100.0% | 90.9% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.67 | 52.0 | 5.42e-01 | 96.4% | 92.2% |
| 4evqA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 52.0 | 3.76e-01 | 98.2% | 30.4% |
| 4bndA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.63 | 51.0 | 3.78e-01 | 92.7% | 62.2% |
| 2g5xA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.62 | 49.0 | 3.57e-01 | 92.7% | 47.1% |
| 3mqgA02 | 2.20.70.110 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.62 | 40.0 | 4.44e-01 | 74.5% | 94.9% |
| 1uoyA01 | 2.30.130.50 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › | 0.59 | 42.0 | 4.25e-01 | 94.5% | 77.2% |
| 1wquA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 46.0 | 3.76e-01 | 94.5% | 47.4% |
| 1s04A00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.57 | 45.0 | 3.67e-01 | 89.1% | 100.0% |
| 6p8uA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 46.0 | 3.40e-01 | 89.1% | 62.5% |
| 4gc1A01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.56 | 39.0 | 3.24e-01 | 89.1% | 39.4% |
| 4dziB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 46.0 | 2.86e-01 | 100.0% | 35.3% |
| 1r75A00 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 38.0 | 3.14e-01 | 74.5% | 81.8% |
| 7jvhC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 45.0 | 2.81e-01 | 94.5% | 31.2% |
| 3noyB02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.55 | 43.0 | 3.73e-01 | 92.7% | 62.1% |
| 7lgjA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.54 | 47.0 | 3.15e-01 | 100.0% | 30.3% |
| 4lg9A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 43.0 | 2.75e-01 | 96.4% | 28.0% |
| 2ahuA02 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.54 | 44.0 | 3.02e-01 | 100.0% | 22.7% |
| 4j0wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 44.0 | 2.78e-01 | 94.5% | 35.8% |
| 1pj5A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.54 | 41.0 | 3.02e-01 | 89.1% | 62.9% |
| 3hj6A02 | 3.40.1620.20 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.54 | 43.0 | 4.28e-01 | 94.5% | 100.0% |
| 2i0rA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 38.0 | 2.43e-01 | 83.6% | 27.9% |
| 2j6aA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 35.0 | 2.73e-01 | 70.9% | 88.2% |
| 3ak5D02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.51 | 39.0 | 2.26e-01 | 92.7% | 12.2% |
| 1xdpA04 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.50 | 41.0 | 3.00e-01 | 100.0% | 75.7% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3405960 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.80 | 59.0 | 6.52e-01 | 87.3% | 100.0% |
| 3900165 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.80 | 59.0 | 6.54e-01 | 83.6% | 100.0% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.77 | 56.0 | 6.08e-01 | 90.9% | 95.6% |
| 3917719 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.76 | 57.0 | 6.22e-01 | 90.9% | 100.0% |
| 3921177 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.75 | 54.0 | 5.41e-01 | 92.7% | 76.4% |
| 3987740 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.75 | 52.0 | 5.79e-01 | 87.3% | 100.0% |
| 3623217 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.74 | 59.0 | 6.17e-01 | 94.5% | 96.0% |
| 1281772 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.73 | 60.0 | 6.07e-01 | 100.0% | 92.6% |
| 1505155 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.71 | 58.0 | 5.83e-01 | 100.0% | 91.1% |
| 4955619 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.68 | 58.0 | 4.14e-01 | 100.0% | 31.8% |
| 5002640 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.65 | 52.0 | 5.46e-01 | 90.9% | 98.0% |
| 3989853 | 77.1.1.13 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR | 0.65 | 56.0 | 3.44e-01 | 96.4% | 35.6% |
| 3516794 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.64 | 50.0 | 3.86e-01 | 90.9% | 41.4% |
| 3453417 | 2492.1.1.39 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DYW_deaminase | 0.64 | 47.0 | 3.61e-01 | 81.8% | 37.0% |
| 3614022 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.63 | 53.0 | 3.44e-01 | 100.0% | 38.3% |
| 4999472 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.62 | 52.0 | 3.61e-01 | 100.0% | 27.4% |
| 4512216 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 42.0 | 4.41e-01 | 76.4% | 80.0% |
| 2905173 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.62 | 47.0 | 4.75e-01 | 89.1% | 88.9% |
| 4928422 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.61 | 50.0 | 3.23e-01 | 100.0% | 43.1% |
| 3582142 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.60 | 49.0 | 3.51e-01 | 96.4% | 31.9% |
| 5079980 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.60 | 50.0 | 3.56e-01 | 100.0% | 28.9% |
| 3502260 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.60 | 48.0 | 3.81e-01 | 94.5% | 45.6% |
| 3893040 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.59 | 41.0 | 4.43e-01 | 85.5% | 91.1% |
| 3278964 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.58 | 44.0 | 3.38e-01 | 96.4% | 32.7% |
| 4004053 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.58 | 48.0 | 4.03e-01 | 92.7% | 70.5% |
| 3607176 | 101.17.1.4 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_2 | 0.57 | 45.0 | 4.01e-01 | 89.1% | 61.0% |
| 4927153 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.57 | 40.0 | 4.04e-01 | 78.2% | 74.5% |
| 5036136 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.56 | 48.0 | 3.10e-01 | 100.0% | 26.1% |
| 3643064 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.56 | 46.0 | 3.19e-01 | 96.4% | 43.4% |
| 3622343 | 5.1.3.9 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF | 0.56 | 46.0 | 3.08e-01 | 96.4% | 47.1% |
| 5018131 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.56 | 43.0 | 3.42e-01 | 96.4% | 66.2% |
| 4011313 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.55 | 46.0 | 3.18e-01 | 98.2% | 40.9% |
| 3892124 | 10.1.1.9 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY | 0.55 | 45.0 | 3.21e-01 | 96.4% | 74.4% |
| 3807514 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.55 | 46.0 | 3.01e-01 | 100.0% | 45.8% |
| 3953965 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 44.0 | 2.96e-01 | 100.0% | 69.8% |
| 3752897 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 43.0 | 2.69e-01 | 96.4% | 26.7% |
| 3276859 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.53 | 45.0 | 3.23e-01 | 100.0% | 49.1% |
| 3248042 | 2006.1.1.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase | 0.53 | 42.0 | 3.04e-01 | 94.5% | 48.9% |
| 3814705 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.52 | 36.0 | 2.24e-01 | 72.7% | 41.4% |
| 3719395 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.52 | 41.0 | 2.49e-01 | 89.1% | 28.2% |
| 3699229 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.52 | 40.0 | 2.37e-01 | 87.3% | 21.7% |
| 4180359 | 2003.1.11.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › AlaDh_PNT_N | 0.52 | 42.0 | 3.01e-01 | 100.0% | 36.5% |
| 3753962 | 5.1.3.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL | 0.52 | 42.0 | 2.64e-01 | 94.5% | 95.0% |
| 3962004 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 35.0 | 2.42e-01 | 72.7% | 51.1% |
| 4945357 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.51 | 41.0 | 3.56e-01 | 92.7% | 92.1% |
D2
medium
residues 133-227
Domain cluster:
representative
D3
medium
residues 228-279
Domain cluster:
representative