←Back to structures

MH271298.1__AWY04880.1__PBI_FLOOF_44__00044

Bact-Vir

MH271298.1__AWY04880.1__PBI_FLOOF_44__00044

Identity

Accession:
MH271298 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casidaviridae› Percivalvirus› Microbacterium_phage_Floof

TaxID: 2201433

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-102
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 63.0 6.23e-01 100.0% 75.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 61.0 5.25e-01 100.0% 54.6%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.78 60.0 6.35e-01 100.0% 92.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 57.0 6.14e-01 100.0% 90.3%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 61.0 5.56e-01 100.0% 65.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 60.0 6.06e-01 100.0% 81.9%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 62.0 6.26e-01 100.0% 87.5%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 53.0 5.57e-01 100.0% 85.7%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.72 56.0 4.04e-01 100.0% 30.2%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.26e-01 100.0% 87.1%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.69 63.0 4.87e-01 100.0% 51.7%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.69 63.0 5.68e-01 100.0% 82.1%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.78e-01 100.0% 95.6%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.03e-01 100.0% 83.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.08e-01 100.0% 87.3%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.66 58.0 4.83e-01 100.0% 56.6%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 60.0 4.72e-01 100.0% 51.4%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 59.0 4.66e-01 100.0% 51.7%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.64 45.0 4.91e-01 93.1% 92.9%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 58.0 4.87e-01 100.0% 61.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.60e-01 100.0% 72.7%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 46.0 3.78e-01 76.4% 69.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 46.0 4.47e-01 100.0% 69.6%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 42.0 4.60e-01 91.7% 87.5%
5dm6H00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.62 56.0 4.56e-01 100.0% 68.7%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 46.0 4.03e-01 86.1% 50.9%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 52.0 3.92e-01 97.2% 67.7%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 52.0 3.74e-01 94.4% 43.8%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 50.0 4.45e-01 94.4% 86.0%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 39.0 2.46e-01 100.0% 11.8%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 48.0 4.20e-01 93.1% 62.4%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 40.0 3.41e-01 100.0% 43.2%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.56 45.0 3.59e-01 87.5% 47.3%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.83e-01 97.2% 82.7%
1w0pA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 46.0 2.99e-01 97.2% 31.0%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 2.88e-01 95.8% 22.3%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 47.0 4.16e-01 94.4% 82.1%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.55 46.0 3.62e-01 100.0% 93.8%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 46.0 4.12e-01 94.4% 79.8%
2d5wA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.54 43.0 3.80e-01 91.7% 94.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 3.39e-01 95.8% 74.4%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 41.0 2.84e-01 83.3% 52.3%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 41.0 3.19e-01 86.1% 65.7%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.53 45.0 3.21e-01 100.0% 30.9%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 45.0 3.74e-01 100.0% 66.2%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.32e-01 100.0% 74.6%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.59e-01 94.4% 93.5%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.72e-01 94.4% 64.5%
6y43A01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.51 39.0 3.15e-01 84.7% 84.4%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 3.49e-01 91.7% 71.3%
3iiiA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 40.0 2.73e-01 88.9% 42.0%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.81 62.0 5.44e-01 100.0% 57.0%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.81 61.0 4.45e-01 100.0% 31.7%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.81 65.0 5.89e-01 100.0% 65.3%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.78 61.0 5.85e-01 100.0% 73.8%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.77 60.0 5.30e-01 100.0% 59.0%
3938484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 4.85e-01 100.0% 48.3%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 59.0 6.06e-01 100.0% 87.1%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.75 59.0 5.84e-01 100.0% 80.0%
3272197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 63.0 5.51e-01 100.0% 62.9%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 53.0 5.57e-01 100.0% 83.1%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.74 63.0 5.97e-01 100.0% 77.6%
3482706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 67.0 5.01e-01 100.0% 51.8%
4101580 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 52.0 5.46e-01 100.0% 83.1%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 52.0 5.46e-01 100.0% 83.1%
3707121 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 6.05e-01 97.2% 89.3%
3218545 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.72 66.0 6.25e-01 100.0% 89.4%
3582834 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.71 59.0 5.30e-01 100.0% 66.3%
3472685 3324.1.1.2 ↗ extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.71 65.0 4.31e-01 100.0% 36.7%
3940546 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.71 64.0 5.48e-01 100.0% 72.2%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 50.0 5.26e-01 100.0% 83.1%
3483566 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 64.0 5.62e-01 100.0% 70.5%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 50.0 5.24e-01 100.0% 83.1%
3627576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 6.01e-01 100.0% 95.4%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 60.0 5.00e-01 100.0% 55.0%
3739863 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.70 64.0 4.68e-01 100.0% 44.3%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 50.0 5.19e-01 100.0% 83.1%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 50.0 5.21e-01 100.0% 83.1%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 50.0 5.22e-01 100.0% 84.6%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.69 53.0 5.36e-01 100.0% 84.3%
573 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.69 63.0 5.68e-01 100.0% 82.1%
3908789 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.68 63.0 4.11e-01 100.0% 27.4%
3828614 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.68 63.0 5.39e-01 100.0% 76.4%
4229837 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.68 63.0 4.56e-01 100.0% 42.2%
3873627 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.68 62.0 5.27e-01 100.0% 67.8%
3493399 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.68 62.0 4.67e-01 100.0% 48.5%
4040055 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.68 47.0 5.11e-01 93.1% 89.7%
4020096 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 61.0 4.88e-01 100.0% 52.9%
3485387 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.82e-01 100.0% 89.3%
3721700 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 4.66e-01 100.0% 61.9%
4656484 1.1.1.5 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.68 55.0 4.28e-01 91.7% 42.0%
3912620 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 62.0 5.95e-01 98.6% 96.2%
3226605 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.67 60.0 4.36e-01 100.0% 46.0%
3190995 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.67 61.0 4.54e-01 100.0% 42.9%
4018672 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.66 60.0 5.14e-01 100.0% 63.5%
4012953 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 60.0 4.69e-01 100.0% 50.0%
3267804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 60.0 5.37e-01 100.0% 87.0%
3575867 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.66 60.0 4.82e-01 100.0% 55.1%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.66 47.0 5.05e-01 93.1% 89.8%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 48.0 5.01e-01 100.0% 87.7%
3736916 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 58.0 4.49e-01 100.0% 60.0%
3700525 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 36.0 3.29e-01 95.8% 42.1%
3189631 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 51.0 4.22e-01 90.3% 69.2%
3988067 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.41e-01 80.6% 83.5%
3259989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 55.0 4.43e-01 100.0% 65.2%
3413757 220.1.1.26 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.60 50.0 4.11e-01 94.4% 62.1%
3657965 9.1.1.21 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Cyclin_D1_bind 0.60 50.0 3.82e-01 95.8% 57.8%
3988859 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.59 49.0 4.40e-01 100.0% 64.8%
4929184 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 3.90e-01 100.0% 82.6%
5032539 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 45.0 4.72e-01 90.3% 100.0%
4073608 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.56 49.0 3.70e-01 98.6% 77.2%
4877991 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 47.0 4.25e-01 95.8% 74.0%
3782925 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 47.0 4.31e-01 94.4% 74.7%
3608810 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 33.0 3.09e-01 91.7% 46.7%
3972305 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 43.0 4.03e-01 86.1% 100.0%
3966429 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.55 43.0 4.00e-01 86.1% 100.0%
3491822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.38e-01 90.3% 98.7%
3486847 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.52 45.0 4.02e-01 100.0% 69.5%
4015826 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 38.0 3.09e-01 79.2% 64.1%
3189800 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 42.0 3.47e-01 95.8% 91.7%
3942564 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 42.0 2.97e-01 97.2% 49.8%
3631248 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.51 43.0 3.69e-01 97.2% 72.0%