←Back to structures

MH271298.1__AWY04888.1__PBI_FLOOF_52__00052

Bact-Vir

MH271298.1__AWY04888.1__PBI_FLOOF_52__00052

Identity

Accession:
MH271298 ↗
Kingdom:
phage

Quality

71.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casidaviridae› Percivalvirus› Microbacterium_phage_Floof

TaxID: 2201433

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-51
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.70 51.0 4.81e-01 78.7% 70.2%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 52.0 3.23e-01 89.4% 52.2%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 55.0 4.01e-01 100.0% 99.3%
2uzzA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.65 46.0 3.09e-01 76.6% 57.6%
2kafA00 3.40.30.150 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Coronavirus polyprotein cleavage domain 0.65 46.0 4.15e-01 100.0% 53.7%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 51.0 3.22e-01 91.5% 29.0%
3n4eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 46.0 3.75e-01 80.9% 43.3%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 48.0 2.95e-01 87.2% 23.5%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 53.0 3.77e-01 100.0% 91.8%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 49.0 3.05e-01 93.6% 50.8%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 52.0 3.22e-01 100.0% 35.4%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 46.0 4.21e-01 85.1% 68.2%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.60 43.0 4.29e-01 78.7% 79.2%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 48.0 3.80e-01 95.7% 75.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 50.0 4.14e-01 100.0% 59.3%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.60 47.0 3.86e-01 100.0% 67.3%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.59 44.0 3.43e-01 85.1% 38.1%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.59 48.0 3.88e-01 100.0% 66.4%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 44.0 3.88e-01 87.2% 58.2%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 3.52e-01 100.0% 52.3%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 41.0 3.22e-01 76.6% 43.0%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 44.0 3.19e-01 89.4% 32.1%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 42.0 3.16e-01 78.7% 31.3%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.40e-01 100.0% 88.0%
7vpqF01 2.60.40.3130 Mainly Beta › Sandwich › Immunoglobulin-like › Coronavirus S1 glycoprotein, central receptor binding domain (RBD) 0.58 40.0 3.27e-01 76.6% 62.0%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 46.0 2.96e-01 100.0% 36.4%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 46.0 2.94e-01 100.0% 32.4%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.57 47.0 2.78e-01 100.0% 32.6%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 42.0 3.98e-01 83.0% 69.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.32e-01 100.0% 82.3%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 43.0 3.81e-01 83.0% 63.9%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 39.0 3.59e-01 100.0% 54.4%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 41.0 3.81e-01 89.4% 71.6%
3dmeA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.91e-01 93.6% 86.4%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.89e-01 95.7% 70.5%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.53 36.0 3.56e-01 80.9% 62.7%
3bt3A02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 37.0 3.53e-01 74.5% 71.9%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.52 42.0 3.14e-01 97.9% 61.0%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 37.0 3.09e-01 83.0% 48.5%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.51 40.0 3.86e-01 100.0% 75.0%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 43.0 3.21e-01 100.0% 75.9%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 40.0 2.69e-01 89.4% 57.6%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 38.0 2.89e-01 85.1% 77.3%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.50 39.0 2.61e-01 93.6% 19.7%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.50 35.0 3.35e-01 87.2% 74.6%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3213130 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.76 53.0 3.37e-01 78.7% 15.4%
5048895 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.71 47.0 4.34e-01 74.5% 53.3%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 4.96e-01 100.0% 75.6%
5029920 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.69 46.0 4.14e-01 74.5% 49.2%
3265019 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 54.0 4.30e-01 91.5% 62.1%
3973145 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 53.0 5.13e-01 89.4% 94.5%
3783252 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 59.0 3.53e-01 100.0% 29.0%
5028306 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 52.0 3.58e-01 87.2% 27.2%
4280539 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.67 57.0 3.16e-01 100.0% 12.5%
4950216 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.67 45.0 4.52e-01 76.6% 68.8%
3229319 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 50.0 4.00e-01 89.4% 61.8%
4057937 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.66 49.0 3.58e-01 80.9% 87.3%
3938601 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.66 47.0 3.76e-01 78.7% 36.8%
5053202 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 44.0 4.66e-01 70.2% 92.3%
3497948 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 50.0 4.40e-01 87.2% 80.0%
4929797 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.65 47.0 4.39e-01 78.7% 66.1%
3773509 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 49.0 4.62e-01 87.2% 75.0%
4944829 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.64 43.0 4.43e-01 76.6% 73.3%
3191760 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 53.0 3.35e-01 95.7% 30.2%
4349950 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.64 47.0 4.41e-01 78.7% 61.7%
4969332 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.64 42.0 3.89e-01 74.5% 51.7%
3535572 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.64 53.0 3.86e-01 95.7% 34.3%
4890599 1.1.7.80 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.63 46.0 4.17e-01 85.1% 57.6%
4119875 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 47.0 4.31e-01 85.1% 66.2%
3605311 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 54.0 3.26e-01 100.0% 28.9%
3903618 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.62 52.0 3.27e-01 100.0% 89.0%
3954708 4325.1.1.9 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 0.62 46.0 4.52e-01 87.2% 76.0%
4864166 5.1.3.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.61 50.0 3.20e-01 93.6% 47.7%
4456732 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 44.0 3.76e-01 78.7% 47.5%
3967545 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 46.0 3.30e-01 89.4% 32.5%
3671924 4325.1.1.12 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › AP2 0.59 42.0 4.54e-01 76.6% 92.3%
3209905 5.1.12.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.58 47.0 2.86e-01 91.5% 73.3%
3926920 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.58 41.0 3.23e-01 78.7% 41.7%
146634 4.1.1.119 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5606 0.58 44.0 4.42e-01 100.0% 89.8%
3168516 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.57 41.0 3.01e-01 78.7% 26.7%
3935555 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.57 48.0 3.05e-01 97.9% 60.2%
3677315 2003.1.6.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.57 47.0 3.20e-01 97.9% 69.5%
3717566 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.57 43.0 2.80e-01 89.4% 33.1%
1389463 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.57 40.0 4.17e-01 74.5% 88.1%
3218937 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.57 43.0 2.84e-01 89.4% 36.7%
4435672 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 43.0 3.94e-01 85.1% 83.1%
4625348 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.56 42.0 3.96e-01 83.0% 66.7%
3402045 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.56 44.0 3.65e-01 100.0% 78.1%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 42.0 3.95e-01 87.2% 100.0%
146935 3158.1.1.1 ↗ beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 0.55 39.0 3.56e-01 100.0% 53.6%
3472863 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.55 42.0 3.37e-01 95.7% 41.5%
3587781 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 45.0 3.35e-01 97.9% 57.0%
5061254 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 43.0 2.70e-01 97.9% 96.5%
5026377 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.52 39.0 3.56e-01 95.7% 60.0%
2464247 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.52 40.0 3.74e-01 93.6% 66.7%
167222 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.52 37.0 3.48e-01 78.7% 65.6%
5021656 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.50 35.0 3.53e-01 83.0% 62.0%