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MH271303.1__AWY05341.1__SEA_MEMENTOMORI_87__00086

Bact-Vir

MH271303.1__AWY05341.1__SEA_MEMENTOMORI_87__00086

Identity

Accession:
MH271303 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hodgkinviridae› Mementomorivirus› Microbacterium_phage_MementoMori

TaxID: 2201436

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-49
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 66.0 6.35e-01 91.3% 75.5%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.76 61.0 4.50e-01 93.5% 34.2%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.75 57.0 4.57e-01 82.6% 52.3%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.72 59.0 5.48e-01 95.7% 76.7%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.72 59.0 5.32e-01 97.8% 70.6%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.72 65.0 5.18e-01 100.0% 82.8%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.71 56.0 4.80e-01 95.7% 53.6%
2ibdA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 52.0 5.27e-01 95.7% 82.2%
1ryp100 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.68 57.0 3.74e-01 100.0% 41.9%
7xxiA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.68 59.0 3.62e-01 100.0% 33.8%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.67 58.0 4.82e-01 100.0% 74.1%
5k7fA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 40.0 4.24e-01 95.7% 68.3%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.65 52.0 4.66e-01 89.1% 64.6%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 59.0 4.88e-01 100.0% 68.4%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 53.0 4.02e-01 91.3% 88.7%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.63 46.0 3.85e-01 78.3% 91.3%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.62 53.0 4.11e-01 95.7% 95.0%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.59 44.0 2.96e-01 91.3% 28.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3685082 4120.1.1.53 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › AA_permease_2 0.90 80.0 5.09e-01 100.0% 22.4%
3585425 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.80 66.0 5.33e-01 97.8% 48.4%
4526829 6130.1.1.1 ↗ alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.78 68.0 5.81e-01 100.0% 61.3%
4636432 6130.1.1.0 ↗ alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain 0.77 64.0 5.76e-01 95.7% 69.2%
3674195 103.9.1.1 ↗ alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain › WPP 0.77 67.0 5.16e-01 100.0% 51.4%
3456467 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.75 66.0 5.38e-01 100.0% 54.1%
4012841 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.74 65.0 5.04e-01 100.0% 48.6%
3314379 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.73 63.0 5.53e-01 100.0% 67.1%
4941754 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.70 54.0 3.44e-01 82.6% 49.8%
3297054 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.69 54.0 4.80e-01 84.8% 66.2%
4588066 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.68 52.0 4.98e-01 91.3% 74.5%
3222543 3652.1.1.0 ↗ alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 0.67 56.0 5.19e-01 95.7% 100.0%
4796680 148.1.3.206 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31015 0.63 49.0 4.64e-01 97.8% 69.6%
3588334 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 50.0 3.77e-01 93.5% 34.4%
5059989 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 3.32e-01 84.8% 30.0%
D2 medium residues 59-123
PDB
Domain cluster: rep: MN062720.1__QDP45503.1__SEA_FUZZBUSTER_19__00019__D132-205