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MH271303.1__AWY05342.1__SEA_MEMENTOMORI_88__00087

Bact-Vir

MH271303.1__AWY05342.1__SEA_MEMENTOMORI_88__00087

Identity

Accession:
MH271303 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hodgkinviridae› Mementomorivirus› Microbacterium_phage_MementoMori

TaxID: 2201436

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-43
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.91 80.0 6.44e-01 100.0% 53.3%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.89 75.0 5.98e-01 100.0% 48.7%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.84 73.0 6.12e-01 100.0% 57.7%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.82 70.0 5.92e-01 100.0% 58.6%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 67.0 4.30e-01 100.0% 21.7%
3q1pA01 6.10.250.1120 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.77 57.0 5.77e-01 85.4% 87.2%
3e22A03 1.10.287.600 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 66.0 6.10e-01 100.0% 94.4%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.75 60.0 5.45e-01 100.0% 66.1%
1o9gA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 61.0 6.11e-01 100.0% 95.3%
1vf6C00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.72 57.0 5.48e-01 100.0% 78.4%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 58.0 5.83e-01 100.0% 95.2%
1e52A00 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.71 59.0 5.45e-01 100.0% 75.0%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 57.0 4.88e-01 100.0% 67.6%
1zmbA02 6.10.170.10 Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.69 52.0 5.41e-01 97.6% 100.0%
3iylU02 1.10.287.1520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 57.0 5.22e-01 92.7% 79.2%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.68 52.0 5.00e-01 90.2% 74.5%
5mmjb02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 54.0 5.06e-01 92.7% 73.1%
2j5iA02 6.10.250.2850 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 45.0 4.64e-01 92.7% 97.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3267614 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.89 71.0 7.20e-01 87.8% 100.0%
3947564 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.88 77.0 6.59e-01 100.0% 63.1%
3971539 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.87 76.0 6.23e-01 100.0% 54.7%
1176726 4325.1.1.2 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C 0.86 76.0 6.30e-01 100.0% 57.7%
3775580 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.85 73.0 6.03e-01 100.0% 54.7%
5033603 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.83 71.0 4.48e-01 100.0% 20.2%
3592498 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.83 71.0 6.04e-01 100.0% 60.0%
1007238 3846.1.1.1 ↗ alpha bundles › IcmR › IcmR › IcmR › IcmR 0.80 68.0 6.12e-01 100.0% 69.5%
3602213 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 66.0 4.56e-01 100.0% 28.3%
3451778 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.76 63.0 4.50e-01 100.0% 30.4%
3628497 4082.1.1.0 ↗ alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain 0.73 63.0 5.98e-01 100.0% 82.0%
4884642 2004.1.1.430 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn 0.73 58.0 3.53e-01 92.7% 14.5%
3593362 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.70 57.0 4.70e-01 100.0% 81.2%
4026528 568.1.1.0 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related 0.69 53.0 4.09e-01 95.1% 35.5%
4938723 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.69 57.0 4.13e-01 100.0% 33.8%
4127368 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.68 56.0 5.35e-01 100.0% 80.0%
3289492 3390.1.1.0 ↗ extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT 0.68 51.0 5.09e-01 92.7% 84.4%
2055367 650.1.1.3 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › HsbA 0.65 54.0 4.69e-01 100.0% 61.4%