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MH271318.1__AWY06537.1__PBI_TRINE_35__00035
Bact-VirMH271318.1__AWY06537.1__PBI_TRINE_35__00035
Identity
- Accession:
- MH271318 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Taxonomy
TaxID: 2201431
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-59
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5eiqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 52.0 | 4.48e-01 | 100.0% | 49.5% |
| 3d33A00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 50.0 | 4.26e-01 | 100.0% | 50.0% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 55.0 | 4.22e-01 | 96.6% | 75.0% |
| 2ibgA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 51.0 | 4.26e-01 | 100.0% | 49.0% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.62 | 44.0 | 4.19e-01 | 98.3% | 62.5% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 51.0 | 4.01e-01 | 96.6% | 60.4% |
| 3a8pB01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 52.0 | 4.22e-01 | 96.6% | 74.1% |
| 2gumB03 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.62 | 52.0 | 4.23e-01 | 100.0% | 90.9% |
| 4osnA00 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.61 | 52.0 | 4.33e-01 | 100.0% | 96.4% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.60 | 52.0 | 4.70e-01 | 100.0% | 76.8% |
| 2wuqB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 52.0 | 3.36e-01 | 100.0% | 83.0% |
| 1bakA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 50.0 | 4.05e-01 | 96.6% | 62.2% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.60 | 46.0 | 4.12e-01 | 100.0% | 58.4% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 47.0 | 4.21e-01 | 93.1% | 95.5% |
| 2hevF00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 42.0 | 3.30e-01 | 100.0% | 34.9% |
| 2dmhA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.59 | 50.0 | 3.89e-01 | 100.0% | 92.1% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.59 | 50.0 | 4.93e-01 | 96.6% | 91.9% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.58 | 48.0 | 4.16e-01 | 94.8% | 77.9% |
| 1xp8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.58 | 35.0 | 3.56e-01 | 86.2% | 58.3% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.57 | 48.0 | 4.52e-01 | 96.6% | 80.6% |
| 3mwbA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 40.0 | 3.50e-01 | 77.6% | 94.8% |
| 4kq7A01 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.56 | 50.0 | 3.62e-01 | 100.0% | 42.0% |
| 1rwhA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.55 | 37.0 | 2.94e-01 | 100.0% | 35.1% |
| 1v30A00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.55 | 40.0 | 3.23e-01 | 77.6% | 78.0% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.55 | 43.0 | 3.25e-01 | 91.4% | 74.5% |
| 2qikA01 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.55 | 38.0 | 3.24e-01 | 75.9% | 86.4% |
| 5cyxA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.54 | 42.0 | 3.48e-01 | 87.9% | 95.4% |
| 4kvxA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 40.0 | 2.94e-01 | 100.0% | 30.9% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 40.0 | 2.78e-01 | 84.5% | 23.3% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 35.0 | 2.70e-01 | 70.7% | 71.3% |
| 3tp4B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.35e-01 | 100.0% | 50.5% |
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.52 | 43.0 | 3.17e-01 | 100.0% | 56.0% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.52 | 42.0 | 3.59e-01 | 100.0% | 86.6% |
| 1kshB00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.52 | 44.0 | 3.41e-01 | 100.0% | 59.9% |
| 6hxiA01 | 3.30.470.110 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.52 | 40.0 | 2.90e-01 | 98.3% | 26.6% |
| 4p55B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.08e-01 | 72.4% | 94.8% |
| 5hb5B00 | 3.30.1610.10 | Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Peptidase S59, nucleoporin | 0.51 | 35.0 | 2.81e-01 | 72.4% | 73.6% |
| 2je8A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 41.0 | 3.01e-01 | 100.0% | 29.7% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.66e-01 | 98.3% | 84.8% |
| 1xhsA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.51 | 36.0 | 3.06e-01 | 79.3% | 84.1% |
| 1rh8A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 44.0 | 3.37e-01 | 100.0% | 46.5% |
| 2hgaA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 41.0 | 3.71e-01 | 94.8% | 97.6% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4531584 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.78 | 52.0 | 6.04e-01 | 98.3% | 100.0% |
| 3415506 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.78 | 57.0 | 4.55e-01 | 100.0% | 40.9% |
| 3561750 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.69 | 53.0 | 4.43e-01 | 100.0% | 49.5% |
| 5062655 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.69 | 59.0 | 3.62e-01 | 100.0% | 22.9% |
| 3867717 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.69 | 52.0 | 4.39e-01 | 100.0% | 49.5% |
| 3549762 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.64 | 49.0 | 3.93e-01 | 100.0% | 41.7% |
| 3798336 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.64 | 54.0 | 5.16e-01 | 100.0% | 95.7% |
| 3751173 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.59 | 50.0 | 4.66e-01 | 98.3% | 98.7% |
| 4069897 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.59 | 39.0 | 4.13e-01 | 98.3% | 80.0% |
| 3805977 | 272.1.1.0 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain | 0.58 | 39.0 | 3.29e-01 | 100.0% | 43.6% |
| 3931413 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.58 | 42.0 | 3.92e-01 | 82.8% | 70.0% |
| 4397447 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 50.0 | 4.17e-01 | 100.0% | 89.5% |
| None | — | 0.57 | 50.0 | 3.01e-01 | 100.0% | 22.4% | |
| 3924428 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 47.0 | 3.90e-01 | 100.0% | 51.4% |
| 4121763 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 49.0 | 2.85e-01 | 100.0% | 17.6% |
| 3258059 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.57 | 46.0 | 4.35e-01 | 100.0% | 96.0% |
| 3576119 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.56 | 50.0 | 3.59e-01 | 100.0% | 44.2% |
| 3588938 | 10.2.1.89 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 | 0.56 | 50.0 | 3.55e-01 | 100.0% | 38.8% |
| 4028473 | 331.23.1.7 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C | 0.56 | 40.0 | 3.80e-01 | 82.8% | 62.7% |
| 4931464 | 822.3.1.0 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 | 0.56 | 47.0 | 4.33e-01 | 94.8% | 77.3% |
| 3226646 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.55 | 41.0 | 3.84e-01 | 86.2% | 97.5% |
| 3321727 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.55 | 38.0 | 3.65e-01 | 94.8% | 61.4% |
| 3794885 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.55 | 41.0 | 3.69e-01 | 86.2% | 56.7% |
| 3282039 | 10.2.1.96 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28588 | 0.55 | 49.0 | 3.48e-01 | 100.0% | 38.8% |
| 3977907 | 223.1.1.57 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif | 0.55 | 41.0 | 2.81e-01 | 86.2% | 74.0% |
| 3969071 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 43.0 | 3.85e-01 | 93.1% | 100.0% |
| 3449952 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 46.0 | 4.05e-01 | 98.3% | 85.6% |
| 3275958 | 848.1.1.1 ↗ | a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 | 0.54 | 38.0 | 2.60e-01 | 75.9% | 86.6% |
| 159493 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.53 | 42.0 | 3.39e-01 | 96.6% | 91.4% |
| 3244820 | 206.1.3.47 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Citrate_synth_N | 0.53 | 43.0 | 2.95e-01 | 100.0% | 22.7% |
| 4382604 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 42.0 | 3.51e-01 | 87.9% | 72.4% |
| 3827943 | 1.1.11.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like | 0.53 | 38.0 | 3.37e-01 | 77.6% | 75.6% |
| 3740600 | 206.1.3.47 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Citrate_synth_N | 0.53 | 43.0 | 2.82e-01 | 100.0% | 19.0% |
| 1710492 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.53 | 35.0 | 2.70e-01 | 70.7% | 71.3% |
| 5023112 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.53 | 37.0 | 3.17e-01 | 77.6% | 97.2% |
| 4992144 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.52 | 42.0 | 3.53e-01 | 93.1% | 97.1% |
| 3615279 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 46.0 | 3.33e-01 | 100.0% | 75.8% |
| 4928258 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.52 | 43.0 | 3.87e-01 | 96.6% | 94.0% |
| 5080153 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 38.0 | 3.96e-01 | 100.0% | 96.0% |
| 3959440 | 4.1.1.180 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3107 | 0.51 | 42.0 | 4.11e-01 | 98.3% | 100.0% |
| 4934164 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.51 | 38.0 | 2.97e-01 | 82.8% | 75.9% |
| 4998831 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 41.0 | 3.91e-01 | 93.1% | 100.0% |
| 5002913 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.51 | 47.0 | 3.29e-01 | 100.0% | 98.8% |
| 5573 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.51 | 36.0 | 3.06e-01 | 79.3% | 84.1% |