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MH271320.1__AWY06667.1__SEA_ZETA1847_33__00033

Bact-Vir

MH271320.1__AWY06667.1__SEA_ZETA1847_33__00033

Identity

Accession:
MH271320 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casidaviridae› Zetavirus› Microbacterium_phage_Zeta1847

TaxID: 2201444

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 97-145
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.53 38.0 2.75e-01 83.7% 45.3%
3if2A00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 44.0 2.61e-01 100.0% 57.7%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 37.0 2.58e-01 81.6% 65.8%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.50 39.0 3.75e-01 100.0% 83.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927631 241.11.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › Luciferase 0.60 41.0 3.52e-01 71.4% 82.5%
3926583 2004.1.1.414 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.59 43.0 2.73e-01 83.7% 26.5%
D2 medium residues 27-96_152-229
PDB
Domain cluster: rep: IMGVR_UViG_3300004069_000063-3300004069-Ga0063354_10012984__D4-66_135-221
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hvnA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.73 25.0 4.16e-01 91.9% 86.8%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.71 25.0 4.05e-01 92.6% 86.8%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.68 23.0 3.82e-01 91.2% 84.9%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.52 27.0 3.64e-01 89.9% 100.0%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 32.0 3.55e-01 96.6% 80.2%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.95e-01 95.9% 91.9%
3wnzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 33.0 3.37e-01 90.5% 66.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018703 815.1.1.0 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.62 27.0 3.45e-01 100.0% 66.7%
3375524 2.1.1.229 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.52 34.0 3.76e-01 91.9% 81.7%
4277262 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.51 34.0 3.84e-01 91.9% 86.4%
3178011 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 37.0 3.86e-01 97.3% 80.7%
4680392 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.50 34.0 3.84e-01 91.9% 90.9%
3690510 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.50 34.0 3.88e-01 91.9% 92.7%