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MH299853.1__AXM43044.1__X__00001
Bact-VirMH299853.1__AXM43044.1__X__00001
Identity
- Accession:
- MH299853 ↗
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Tequatrovirus›
Salmonella_phage_Alpha-a
TaxID: 2301448
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-51
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fvmA04 | 6.10.10.100 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › | 0.92 | 63.0 | 6.57e-01 | 72.0% | 82.6% |
| 2ofyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 50.0 | 4.52e-01 | 80.0% | 90.0% |
| 4xabA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.63 | 43.0 | 2.70e-01 | 70.0% | 60.8% |
| 4ghjB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 43.0 | 3.87e-01 | 74.0% | 81.6% |
| 3s0aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.63 | 43.0 | 3.27e-01 | 72.0% | 36.1% |
| 2a6cA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 42.0 | 3.67e-01 | 70.0% | 85.5% |
| 1iv8A03 | 1.10.150.200 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 | 0.62 | 44.0 | 3.74e-01 | 76.0% | 64.7% |
| 1yt3A03 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.58 | 40.0 | 3.47e-01 | 72.0% | 87.8% |
| 3ivpD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 41.0 | 3.70e-01 | 78.0% | 84.0% |
| 7ep3A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 43.0 | 2.81e-01 | 84.0% | 43.5% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 42.0 | 3.61e-01 | 80.0% | 55.6% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 41.0 | 3.32e-01 | 100.0% | 39.8% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 34.0 | 3.24e-01 | 98.0% | 46.8% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 36.0 | 3.46e-01 | 74.0% | 100.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 11143 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.90 | 83.0 | 4.80e-01 | 100.0% | 13.6% |
| 4024811 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.85 | 77.0 | 4.69e-01 | 100.0% | 18.9% |
| 4939488 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.83 | 75.0 | 4.58e-01 | 100.0% | 67.6% |
| 3520437 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.81 | 73.0 | 4.81e-01 | 100.0% | 27.9% |
| 3710418 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.79 | 68.0 | 4.02e-01 | 100.0% | 14.1% |
| 3995965 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.77 | 65.0 | 4.45e-01 | 100.0% | 28.6% |
| 3368695 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 64.0 | 3.80e-01 | 100.0% | 58.2% |
| 3496492 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.74 | 63.0 | 3.93e-01 | 100.0% | 82.1% |
| 5025208 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.73 | 63.0 | 4.10e-01 | 100.0% | 83.5% |
| 3700507 | 2004.1.1.427 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N | 0.67 | 56.0 | 3.40e-01 | 96.0% | 83.6% |
| 5043707 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.63 | 47.0 | 4.19e-01 | 80.0% | 62.9% |
| 3705622 | 2008.1.1.118 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RHSP | 0.63 | 52.0 | 3.20e-01 | 96.0% | 15.8% |
| 3516224 | 7512.1.1.53 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › ALG11_N | 0.62 | 46.0 | 2.89e-01 | 80.0% | 86.5% |
| 3704045 | 148.1.3.174 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RHSP | 0.61 | 47.0 | 4.05e-01 | 88.0% | 52.9% |
| 4001430 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 46.0 | 4.20e-01 | 82.0% | 63.1% |
| 4030410 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.55 | 44.0 | 2.76e-01 | 90.0% | 32.7% |
| 4011440 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.52 | 41.0 | 2.55e-01 | 88.0% | 50.5% |
D2
medium
residues 73-80_82-105_196-198_268-406
Domain cluster:
rep: OQ508957.1__WGH49722.1__X__00006__D11-126
D3
medium
residues 407-464
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03732.24 best | Retrotrans_gag | 24.5 | 3.60e-05 | 96.5% | 43.3% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oyqD05 | 1.20.1280.300 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.92 | 78.0 | 6.44e-01 | 91.4% | 54.2% |
| 3swxA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.82 | 61.0 | 6.16e-01 | 79.3% | 91.4% |
| 3iayA07 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.76 | 67.0 | 4.93e-01 | 100.0% | 48.0% |
| 4di1C02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.75 | 50.0 | 5.69e-01 | 70.7% | 100.0% |
| 1jxzC02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.74 | 56.0 | 5.62e-01 | 81.0% | 88.3% |
| 4fzwA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.73 | 54.0 | 5.41e-01 | 79.3% | 91.4% |
| 4og1A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.73 | 53.0 | 5.37e-01 | 79.3% | 91.4% |
| 1m2vB01 | 1.20.120.730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain | 0.72 | 54.0 | 3.83e-01 | 79.3% | 46.7% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.71 | 55.0 | 4.15e-01 | 84.5% | 97.2% |
| 1dciA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.70 | 56.0 | 5.46e-01 | 87.9% | 90.5% |
| 3g5jA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.70 | 50.0 | 3.79e-01 | 72.4% | 40.0% |
| 3ciaA03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.68 | 54.0 | 4.03e-01 | 89.7% | 73.5% |
| 4e6hA00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.67 | 54.0 | 3.05e-01 | 84.5% | 19.3% |
| 3cyfA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.67 | 46.0 | 3.18e-01 | 72.4% | 23.7% |
| 2uy1A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 54.0 | 3.15e-01 | 89.7% | 38.4% |
| 2f6sA00 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.63 | 46.0 | 3.27e-01 | 79.3% | 86.1% |
| 4bjmC00 | 1.20.58.1680 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 51.0 | 3.54e-01 | 94.8% | 46.5% |
| 3qkaE02 | 1.10.287.2460 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 41.0 | 4.46e-01 | 74.1% | 95.3% |
| 2ahfA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.60 | 50.0 | 3.06e-01 | 96.6% | 38.2% |
| 4mspB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 43.0 | 4.05e-01 | 87.9% | 72.0% |
| 2lefA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.56 | 40.0 | 3.67e-01 | 81.0% | 86.0% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.55 | 41.0 | 4.31e-01 | 82.8% | 86.8% |
| 4abnA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 42.0 | 2.78e-01 | 86.2% | 28.7% |
| 4ag6A02 | 1.10.8.730 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 40.0 | 3.39e-01 | 82.8% | 47.3% |
| 3kxyT00 | 6.20.290.10 | Special › Other non-globular › Dna Ligase; domain 1 › | 0.51 | 32.0 | 3.12e-01 | 70.7% | 50.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1626921 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.91 | 81.0 | 8.16e-01 | 96.6% | 94.8% |
| 1256613 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.86 | 76.0 | 5.28e-01 | 96.6% | 34.5% |
| 3932597 | 4969.1.1.1 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.78 | 70.0 | 5.10e-01 | 100.0% | 46.5% |
| 5025210 | 4969.1.1.1 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.77 | 70.0 | 5.10e-01 | 100.0% | 52.7% |
| 3791586 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.74 | 55.0 | 3.25e-01 | 77.6% | 89.3% |
| 3477809 | 1005.1.1.0 ↗ | alpha arrays › Cell-shape determining Csd6 N-terminal dimerization domain › Cell-shape determining Csd6 N-terminal dimerization domain › Cell-shape determining Csd6 N-terminal dimerization domain | 0.73 | 49.0 | 4.55e-01 | 74.1% | 54.7% |
| 5025844 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.73 | 64.0 | 4.77e-01 | 100.0% | 44.7% |
| 4994080 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.72 | 55.0 | 4.10e-01 | 81.0% | 33.6% |
| 3407920 | 101.1.2.73 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 | 0.72 | 50.0 | 4.17e-01 | 74.1% | 42.0% |
| 3935265 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.69 | 49.0 | 5.22e-01 | 75.9% | 84.0% |
| 3958398 | 4120.1.1.96 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › ECH_1 | 0.68 | 53.0 | 4.45e-01 | 87.9% | 57.7% |
| 3386877 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.65 | 54.0 | 3.90e-01 | 89.7% | 55.6% |
| 4433236 | 5086.1.1.224 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ARA70 | 0.64 | 43.0 | 3.27e-01 | 70.7% | 28.3% |
| 3766354 | 110.1.1.4 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN | 0.62 | 43.0 | 3.53e-01 | 74.1% | 60.9% |
| 3503648 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.58 | 43.0 | 4.29e-01 | 81.0% | 76.7% |
| 3278617 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.58 | 39.0 | 4.10e-01 | 70.7% | 98.0% |
| 4968341 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 39.0 | 2.63e-01 | 75.9% | 16.5% |
| 3229435 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.56 | 40.0 | 2.99e-01 | 82.8% | 26.1% |