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MH316566.1__AWY03909.1__SEA_NEDARYA_92__00090
Bact-VirMH316566.1__AWY03909.1__SEA_NEDARYA_92__00090
Identity
- Accession:
- MH316566 ↗
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Taxonomy
TaxID: 2234025
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-65
Domain cluster:
rep: OP172876.1__UVT31739.1__SEA_PATOS_46__00046__D69-124
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.73 | 52.0 | 5.18e-01 | 79.4% | 72.7% |
| 2zm5A02 | 1.10.20.140 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.68 | 58.0 | 5.56e-01 | 96.8% | 81.9% |
| 1jqkA03 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 46.0 | 3.37e-01 | 74.6% | 30.3% |
| 3mfiA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 48.0 | 4.59e-01 | 88.9% | 97.4% |
| 2p9xA00 | 1.10.1200.200 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 | 0.58 | 38.0 | 3.30e-01 | 100.0% | 42.9% |
| 4uavA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 42.0 | 3.86e-01 | 84.1% | 77.6% |
| 3psfA05 | 1.10.10.2740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spt6, Death-like domain | 0.53 | 41.0 | 3.65e-01 | 87.3% | 88.0% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 39.0 | 3.73e-01 | 82.5% | 77.2% |
| 3u02A01 | 3.30.70.2200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 3.50e-01 | 98.4% | 95.1% |
| 1jqjD03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 39.0 | 3.60e-01 | 98.4% | 60.5% |
| 3kevA02 | 1.10.238.200 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Cullin, PONY binding domain | 0.51 | 34.0 | 3.12e-01 | 71.4% | 69.5% |
| 2qr4A02 | 1.10.287.830 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like | 0.51 | 31.0 | 3.49e-01 | 98.4% | 80.9% |
| 4c2uA04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.51 | 38.0 | 2.90e-01 | 84.1% | 77.5% |
| 3b34A03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.51 | 44.0 | 3.29e-01 | 98.4% | 89.6% |
| 1kv9A02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.51 | 38.0 | 3.39e-01 | 87.3% | 67.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4650016 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.76 | 57.0 | 5.73e-01 | 81.0% | 84.6% |
| 4455041 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.76 | 57.0 | 5.70e-01 | 81.0% | 86.2% |
| 4290005 | 3949.1.1.0 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain | 0.75 | 56.0 | 5.93e-01 | 79.4% | 94.5% |
| 4273301 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.75 | 58.0 | 5.47e-01 | 84.1% | 74.7% |
| 4141594 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.73 | 57.0 | 5.41e-01 | 84.1% | 78.7% |
| 3959006 | 3949.1.1.0 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain | 0.73 | 56.0 | 5.49e-01 | 84.1% | 80.0% |
| 4664522 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.73 | 57.0 | 5.41e-01 | 85.7% | 77.3% |
| 4452651 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.72 | 55.0 | 4.94e-01 | 84.1% | 62.2% |
| 4516657 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.72 | 55.0 | 5.50e-01 | 84.1% | 86.2% |
| 4043052 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.71 | 54.0 | 5.16e-01 | 82.5% | 77.3% |
| 4078399 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.70 | 55.0 | 5.49e-01 | 100.0% | 83.1% |
| 4458432 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.70 | 54.0 | 5.12e-01 | 84.1% | 74.7% |
| 4682840 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.70 | 54.0 | 5.23e-01 | 84.1% | 77.1% |
| 4095596 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.69 | 59.0 | 5.70e-01 | 93.7% | 84.3% |
| 4340863 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.68 | 57.0 | 5.50e-01 | 100.0% | 81.4% |
| 4455862 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.68 | 55.0 | 5.22e-01 | 96.8% | 76.0% |
| 4176541 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.67 | 54.0 | 5.31e-01 | 96.8% | 81.4% |
| 5017793 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.67 | 47.0 | 4.84e-01 | 74.6% | 83.3% |
| 4275354 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.64 | 56.0 | 4.26e-01 | 100.0% | 94.8% |
| 4435768 | 3949.1.1.0 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain | 0.64 | 48.0 | 4.95e-01 | 98.4% | 88.3% |
| 4638438 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.62 | 53.0 | 4.03e-01 | 100.0% | 93.8% |
| 3738831 | 102.1.1.41 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › EME1-MUS81_C | 0.59 | 44.0 | 4.10e-01 | 84.1% | 86.7% |
| 4008778 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 42.0 | 4.40e-01 | 81.0% | 87.3% |
| 4548724 | 379.1.1.9 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › PBP_sp32 | 0.56 | 39.0 | 3.49e-01 | 74.6% | 90.5% |
| 4961799 | 102.1.4.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › Nop C-terminal domain › Transposase_20 | 0.55 | 50.0 | 3.96e-01 | 100.0% | 57.6% |
| 5084007 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 41.0 | 3.90e-01 | 81.0% | 72.0% |
| 5020278 | 3012.1.1.19 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27313 | 0.53 | 36.0 | 3.10e-01 | 73.0% | 69.6% |
| 4928641 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.53 | 40.0 | 3.87e-01 | 84.1% | 76.0% |
| 3239257 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.52 | 33.0 | 3.42e-01 | 98.4% | 68.3% |
| 3194261 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 40.0 | 3.41e-01 | 88.9% | 66.1% |
| 3833695 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.52 | 40.0 | 3.52e-01 | 84.1% | 60.0% |
| 3321298 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.51 | 42.0 | 2.89e-01 | 100.0% | 79.2% |
| 4438868 | 6059.1.1.1 ↗ | alpha bundles › X8 domain › X8 domain › X8 domain › X8 | 0.50 | 43.0 | 3.72e-01 | 96.8% | 68.0% |