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MH356730.1__AWY02856.1__X__00001

Bact-Vir

MH356730.1__AWY02856.1__X__00001

Identity

Accession:
MH356730 ↗
Kingdom:
phage

Quality

49.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sextaecvirus› Staphylococcus_phage_VB-SauS-SA2

TaxID: 2234082

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
D2 high residues 73-129
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.77 69.0 5.90e-01 100.0% 87.8%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 4.37e-01 86.0% 100.0%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 5.42e-01 91.2% 98.2%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.58e-01 100.0% 92.2%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 5.15e-01 91.2% 91.8%
3cp0A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 45.0 4.41e-01 77.2% 96.8%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 4.44e-01 91.2% 83.7%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.59e-01 100.0% 84.4%
2woyA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 53.0 3.86e-01 100.0% 49.4%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 46.0 4.42e-01 91.2% 88.2%
4ofqA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 51.0 3.78e-01 100.0% 49.7%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 48.0 3.79e-01 93.0% 96.7%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.56e-01 100.0% 90.3%
5oesA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.57 40.0 3.26e-01 77.2% 86.3%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 3.22e-01 93.0% 71.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.56 46.0 4.55e-01 96.5% 93.7%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.55 46.0 3.84e-01 98.2% 99.1%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 3.66e-01 100.0% 86.4%
2c1iA02 3.90.640.30 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.53 43.0 3.97e-01 93.0% 71.4%
3hhwK01 1.10.3570.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain 0.52 43.0 3.13e-01 98.2% 74.9%
2ogjA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.52 43.0 3.55e-01 100.0% 82.6%
4wpzA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 42.0 2.58e-01 93.0% 72.9%
2xxpA02 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.51 41.0 2.80e-01 100.0% 56.9%
4qloA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 2.54e-01 91.2% 34.9%
5d6oA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 38.0 2.44e-01 89.5% 33.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1144827 4.1.1.79 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3601 0.77 69.0 5.92e-01 100.0% 88.8%
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.65e-01 93.0% 92.9%
3059317 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.71 61.0 4.96e-01 98.2% 99.1%
4118011 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.71 60.0 5.36e-01 100.0% 85.9%
3214234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 53.0 5.27e-01 91.2% 95.0%
3473172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.07e-01 96.5% 80.0%
3484084 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 58.0 4.91e-01 100.0% 70.5%
4097420 11.1.5.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Antigen_C 0.60 53.0 3.84e-01 100.0% 48.8%
4270390 11.1.5.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Antigen_C 0.60 53.0 3.78e-01 100.0% 45.9%
3270868 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.59 47.0 4.77e-01 96.5% 89.1%
4048813 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.59 47.0 4.85e-01 98.2% 90.9%
1283663 11.1.5.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Antigen_C 0.59 51.0 3.77e-01 100.0% 49.4%
3705484 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.59 45.0 4.61e-01 100.0% 87.3%
3714926 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.59 45.0 4.75e-01 96.5% 94.0%
3593797 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.58 45.0 4.59e-01 100.0% 87.3%
3894729 4.1.1.461 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.58 48.0 4.22e-01 96.5% 94.4%
3714918 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.58 44.0 4.52e-01 98.2% 87.3%
3606398 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.57 44.0 4.53e-01 98.2% 87.3%
55 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.57 47.0 3.26e-01 93.0% 74.7%
5063276 302.4.1.2 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › SBP_bac_5 0.56 48.0 3.92e-01 98.2% 81.8%
3587629 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.56e-01 100.0% 95.4%
3600188 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.56 43.0 4.38e-01 98.2% 87.3%
4949453 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.55 37.0 3.59e-01 70.2% 86.2%
4517008 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.55 45.0 4.15e-01 100.0% 82.5%
5034811 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.53 37.0 3.67e-01 75.4% 81.7%
D3 high residues 156-255
PDB
D4 high residues 284-335
PDB