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MH356730.1__AWY02897.1__X__00042

Bact-Vir

MH356730.1__AWY02897.1__X__00042

Identity

Accession:
MH356730 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sextaecvirus› Staphylococcus_phage_VB-SauS-SA2

TaxID: 2234082

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-23_36-106
PDB
Domain cluster: rep: NC_047931.1__YP_009798680.1__HOS85_gp010__00010__D24-111
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.68 46.0 3.75e-01 70.0% 82.7%
4iiqC02 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 45.0 3.58e-01 70.0% 82.0%
1t7vA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 44.0 3.55e-01 71.1% 82.0%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 44.0 3.52e-01 71.1% 83.7%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 42.0 3.34e-01 71.1% 96.1%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 48.0 4.78e-01 85.6% 96.8%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 3.50e-01 91.1% 79.2%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.58 47.0 4.61e-01 88.9% 84.4%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.56 39.0 3.64e-01 74.4% 63.9%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.74e-01 92.2% 52.5%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.65e-01 90.0% 48.9%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.54 40.0 4.21e-01 82.2% 89.7%
5ocrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.16e-01 90.0% 45.0%
6aiiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 2.68e-01 78.9% 48.2%
4bpzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.18e-01 90.0% 45.8%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 43.0 3.58e-01 90.0% 57.0%
8ep4C01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.10e-01 90.0% 41.6%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.65e-01 87.8% 66.0%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.65e-01 87.8% 71.2%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.65e-01 88.9% 66.7%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.51 33.0 3.86e-01 97.8% 92.3%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 37.0 3.60e-01 81.1% 69.7%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.57e-01 88.9% 68.1%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.15e-01 90.0% 47.7%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.09e-01 92.2% 43.0%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.18e-01 100.0% 80.9%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.65e-01 90.0% 69.0%
1xd3C00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.50 38.0 2.90e-01 82.2% 94.3%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.50 43.0 3.32e-01 98.9% 72.2%
7b2sA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.50 38.0 3.28e-01 83.3% 77.4%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.50 34.0 3.95e-01 96.7% 98.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3553889 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.75 51.0 3.87e-01 70.0% 76.4%
138051 233.1.1.6 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.68 46.0 3.74e-01 70.0% 82.2%
3847239 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.65 45.0 3.52e-01 70.0% 83.8%
5057575 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.65 52.0 3.66e-01 85.6% 75.3%
3859354 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.65 47.0 3.67e-01 74.4% 97.8%
4271645 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.65 44.0 3.53e-01 71.1% 78.9%
3881500 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.64 44.0 3.50e-01 70.0% 81.1%
3907478 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.64 43.0 3.48e-01 70.0% 81.1%
3881032 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.64 43.0 3.42e-01 70.0% 83.2%
5045767 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 40.0 4.09e-01 73.3% 64.4%
4987739 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.62 52.0 3.85e-01 91.1% 56.2%
4948221 331.1.1.29 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Fer4_10 0.61 39.0 4.01e-01 72.2% 67.1%
3961571 3699.1.1.3 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth 0.60 41.0 3.77e-01 71.1% 86.7%
169555 233.1.1.6 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.60 41.0 3.25e-01 71.1% 95.6%
4468976 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.59 47.0 3.26e-01 85.6% 72.4%
5028597 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.58 37.0 3.87e-01 75.6% 71.2%
4236965 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.58 45.0 4.25e-01 82.2% 92.4%
4937221 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 36.0 3.91e-01 75.6% 76.0%
4943589 331.1.1.28 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Fer4_7 0.57 47.0 3.88e-01 88.9% 79.4%
5067782 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 37.0 4.01e-01 70.0% 82.9%
4836497 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.57 41.0 3.30e-01 75.6% 48.6%
3480502 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.77e-01 86.7% 19.7%
3485317 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 45.0 2.75e-01 86.7% 19.3%
4982613 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 37.0 4.09e-01 73.3% 92.3%
3752681 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.56 40.0 3.12e-01 74.4% 92.6%
3455233 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 48.0 3.21e-01 100.0% 71.1%
4968280 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 39.0 3.93e-01 74.4% 73.3%
3662606 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 46.0 3.46e-01 90.0% 52.3%
4679871 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.55 38.0 4.03e-01 87.8% 82.5%
4993386 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 39.0 3.85e-01 77.8% 70.5%
5028032 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.55 37.0 3.78e-01 74.4% 71.8%
4599964 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 35.0 3.72e-01 93.3% 77.3%
4080030 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.54 36.0 3.82e-01 91.1% 81.3%
4446499 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.54 36.0 3.78e-01 96.7% 76.2%
4678264 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.53 37.0 3.84e-01 93.3% 80.0%
5041453 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 36.0 3.73e-01 75.6% 74.1%
4478959 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.53 33.0 3.55e-01 76.7% 74.7%
4487949 220.1.1.69 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.53 38.0 3.39e-01 73.3% 77.5%
3269736 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.52 37.0 3.74e-01 74.4% 76.7%
4659650 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 38.0 3.81e-01 100.0% 75.6%
3178343 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.52 39.0 2.88e-01 92.2% 27.0%
2990561 10.1.1.74 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF30275 0.52 42.0 3.08e-01 90.0% 40.4%
1007214 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 42.0 3.65e-01 87.8% 66.0%
5067171 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.52 35.0 4.08e-01 100.0% 96.9%
3915934 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 43.0 2.93e-01 96.7% 68.2%
154364 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.52 42.0 3.51e-01 90.0% 56.4%
3399742 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.52 45.0 3.11e-01 100.0% 86.2%
5075886 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.52 35.0 3.98e-01 98.9% 91.4%
3491951 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.52 45.0 3.07e-01 100.0% 85.1%
3481353 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 3.08e-01 100.0% 86.4%
3894260 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.51 42.0 2.92e-01 95.6% 76.9%
3175648 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.51 43.0 3.03e-01 97.8% 59.1%
3222575 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.50 41.0 3.04e-01 92.2% 59.1%
4608534 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.50 43.0 3.02e-01 98.9% 70.2%