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MH356730.1__AWY02920.1__X__00065

Bact-Vir

MH356730.1__AWY02920.1__X__00065

Identity

Accession:
MH356730 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sextaecvirus› Staphylococcus_phage_VB-SauS-SA2

TaxID: 2234082

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-70
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.66 57.0 4.93e-01 100.0% 81.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 52.0 3.82e-01 100.0% 48.9%
2mizA00 2.60.40.2900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 50.0 3.93e-01 100.0% 75.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.60 49.0 4.42e-01 100.0% 64.8%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.60 49.0 4.36e-01 100.0% 63.4%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 44.0 3.02e-01 85.5% 57.7%
5wt7A00 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.56 42.0 3.30e-01 82.3% 42.1%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.56 43.0 4.03e-01 85.5% 87.2%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 46.0 2.95e-01 100.0% 29.3%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 2.89e-01 71.0% 92.9%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.53 38.0 2.66e-01 77.4% 91.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.16e-01 90.3% 90.0%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.53 39.0 3.33e-01 82.3% 72.4%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 41.0 3.27e-01 93.5% 73.4%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 43.0 2.85e-01 100.0% 36.2%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.52 46.0 3.95e-01 100.0% 92.1%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.63e-01 100.0% 83.5%
1hh2P02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 30.0 3.07e-01 80.6% 57.1%
2ws9100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 2.96e-01 100.0% 63.4%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.29e-01 80.6% 67.0%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.41e-01 100.0% 51.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.65e-01 100.0% 69.6%
2wzpP03 2.60.120.880 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.48e-01 100.0% 74.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976351 219.1.1.40 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AmiA-like 0.69 59.0 4.04e-01 100.0% 32.8%
3317402 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.62 49.0 4.40e-01 90.3% 83.3%
5079913 4011.1.1.0 ↗ beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.59 39.0 4.14e-01 71.0% 83.0%
3762030 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.57 49.0 3.98e-01 100.0% 60.8%
3817488 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.56 45.0 3.93e-01 93.5% 98.1%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.57e-01 100.0% 98.7%
2773985 219.1.1.43 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase 0.54 43.0 2.98e-01 100.0% 23.8%
3057477 220.1.1.146 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.53 38.0 3.50e-01 80.6% 83.5%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 45.0 4.43e-01 100.0% 94.2%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 43.0 4.30e-01 96.8% 98.5%
3594717 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 39.0 3.27e-01 85.5% 99.2%
5064007 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.52 45.0 3.29e-01 100.0% 92.2%
4957326 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.52 37.0 2.59e-01 77.4% 95.5%
4945617 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 38.0 2.92e-01 82.3% 85.6%
3963617 2.4.1.4 ↗ beta barrels › OB-fold › MOP-like › MOP-like › FbpC_C_terminal 0.52 32.0 3.19e-01 80.6% 60.0%
4472412 223.11.1.1 ↗ a+b three layers › Profilin-like › N-terminal domain of Apc beta-subunit › N-terminal domain of Apc beta-subunit › Hydantoinase_B 0.51 43.0 3.00e-01 96.8% 39.1%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.18e-01 100.0% 92.9%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 42.0 4.18e-01 98.4% 100.0%
4299932 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 42.0 4.21e-01 96.8% 96.9%