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MH370477.2__AXC34569.1__X__00005

Bact-Vir

MH370477.2__AXC34569.1__X__00005

Identity

Accession:
MH370477 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-118
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03906.21 best Phage_T7_tail 128.4 2.20e-37 100.0% 82.4%
D2 high residues 306-397
PDB
D3 high residues 519-610
PDB
CATH (71)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.86 75.0 7.65e-01 100.0% 95.6%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.67 60.0 4.76e-01 100.0% 54.3%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 57.0 5.35e-01 95.7% 87.5%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 56.0 5.30e-01 94.6% 84.8%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 40.0 4.47e-01 93.5% 79.5%
5eb9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 55.0 5.21e-01 95.7% 88.4%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 43.0 3.75e-01 100.0% 45.8%
2xn1A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.63 45.0 3.17e-01 76.1% 80.3%
2yfoA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.62 44.0 3.12e-01 75.0% 53.9%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.62 51.0 5.10e-01 89.1% 97.9%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 40.0 3.61e-01 100.0% 48.8%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.69e-01 93.5% 79.3%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.60 43.0 3.10e-01 76.1% 80.5%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 34.0 3.56e-01 72.8% 58.8%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.60 43.0 3.06e-01 76.1% 53.6%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 39.0 3.18e-01 98.9% 33.5%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 38.0 3.51e-01 88.0% 49.2%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.59 53.0 4.89e-01 100.0% 100.0%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 42.0 3.89e-01 80.4% 58.0%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 40.0 3.52e-01 77.2% 47.4%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.58 36.0 4.04e-01 82.6% 83.6%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 40.0 3.96e-01 70.7% 100.0%
4rdbA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 47.0 4.02e-01 88.0% 59.7%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 3.53e-01 80.4% 47.1%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 41.0 3.72e-01 81.5% 53.9%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 51.0 4.73e-01 98.9% 95.8%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 38.0 3.70e-01 94.6% 59.4%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 42.0 4.02e-01 95.7% 67.3%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 43.0 3.48e-01 94.6% 42.0%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.84e-01 98.9% 55.6%
4lplA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 49.0 4.34e-01 98.9% 100.0%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 39.0 3.47e-01 80.4% 48.5%
1tdqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.41e-01 98.9% 83.0%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 3.53e-01 94.6% 50.4%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.56 41.0 3.21e-01 81.5% 35.2%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.56 29.0 2.76e-01 75.0% 39.6%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 4.20e-01 92.4% 87.2%
3s2cJ01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 44.0 3.89e-01 98.9% 56.4%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.56 43.0 3.74e-01 82.6% 79.3%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 3.61e-01 80.4% 53.8%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 48.0 4.55e-01 96.7% 95.4%
1x31C01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.54 45.0 4.36e-01 91.3% 81.0%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 46.0 4.60e-01 96.7% 100.0%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 4.30e-01 91.3% 100.0%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 48.0 4.30e-01 100.0% 74.8%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 4.52e-01 95.7% 100.0%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.90e-01 98.9% 63.7%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.55e-01 96.7% 51.0%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 45.0 4.33e-01 96.7% 90.1%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 38.0 3.34e-01 80.4% 48.3%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.19e-01 80.4% 40.8%
3jclA01 2.60.120.960 Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain 0.53 45.0 3.32e-01 100.0% 77.4%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.53 34.0 3.92e-01 73.9% 90.8%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 44.0 4.43e-01 94.6% 100.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 43.0 4.33e-01 91.3% 96.9%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 3.25e-01 94.6% 44.0%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 40.0 3.71e-01 88.0% 63.3%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 39.0 3.37e-01 80.4% 50.0%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 4.21e-01 90.2% 89.8%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.86e-01 96.7% 69.3%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.36e-01 80.4% 54.4%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.51 37.0 3.98e-01 81.5% 89.7%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.51 35.0 3.31e-01 72.8% 90.9%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.33e-01 79.3% 53.5%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.51 37.0 3.36e-01 100.0% 57.5%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.51 44.0 3.70e-01 97.8% 92.0%
1txkA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 43.0 2.93e-01 95.7% 53.1%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.51 37.0 3.93e-01 79.3% 85.7%
4ccdA03 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 42.0 3.45e-01 98.9% 80.5%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.50 43.0 3.98e-01 96.7% 83.6%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 3.25e-01 78.3% 76.8%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4554156 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.71 51.0 3.63e-01 73.9% 68.8%
5027230 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.65 47.0 4.89e-01 96.7% 82.4%
4864730 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.65 55.0 5.14e-01 95.7% 84.3%
1651 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.64 53.0 5.02e-01 92.4% 84.1%
3496817 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.64 46.0 3.89e-01 76.1% 82.5%
1148155 12.3.1.25 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N 0.63 45.0 3.15e-01 76.1% 77.3%
5026836 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.63 39.0 4.32e-01 88.0% 81.4%
1385068 12.3.1.25 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N 0.62 44.0 3.10e-01 75.0% 51.9%
4466055 12.3.1.25 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N 0.61 44.0 3.06e-01 75.0% 75.6%
4977711 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.61 41.0 3.56e-01 79.3% 44.1%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 45.0 4.80e-01 100.0% 92.5%
5072371 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 41.0 4.04e-01 82.6% 66.0%
3727810 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 47.0 3.92e-01 97.8% 48.8%
5018015 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 41.0 3.52e-01 80.4% 45.5%
4013577 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 46.0 3.79e-01 97.8% 45.9%
3449628 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.59 40.0 3.70e-01 96.7% 55.7%
4928784 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.58 40.0 3.13e-01 78.3% 32.2%
3928295 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 50.0 4.03e-01 100.0% 71.0%
3604671 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 44.0 3.81e-01 82.6% 53.2%
3280029 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 42.0 3.75e-01 84.8% 53.3%
5076889 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 40.0 3.58e-01 80.4% 51.1%
138887 1.1.5.32 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR 0.57 44.0 4.04e-01 95.7% 64.1%
3289725 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 41.0 3.71e-01 84.8% 54.6%
3913637 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.56 43.0 4.37e-01 84.8% 83.3%
4368632 10.32.1.266 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GldH_lipo 0.56 50.0 4.35e-01 100.0% 97.1%
3988748 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.56 48.0 4.19e-01 98.9% 97.9%
3573883 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 49.0 4.42e-01 98.9% 95.2%
2455725 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 47.0 4.53e-01 96.7% 94.3%
3680066 10.10.1.5 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › DUF7755 0.54 44.0 3.72e-01 88.0% 54.8%
4987534 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 42.0 3.56e-01 95.7% 50.7%
3630527 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 33.0 3.75e-01 77.2% 84.6%
3284440 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 40.0 3.56e-01 80.4% 53.6%
3398695 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 41.0 3.13e-01 80.4% 38.0%
3707942 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 46.0 4.37e-01 98.9% 98.3%
3056322 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 46.0 4.38e-01 98.9% 99.1%
4942093 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 46.0 3.72e-01 100.0% 60.5%
3969586 10.32.1.27 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › 7TMR-DISMED2 0.53 44.0 3.87e-01 95.7% 95.3%
3264337 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 39.0 2.93e-01 80.4% 96.1%
4142082 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 45.0 4.43e-01 100.0% 89.0%
3290160 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.52 41.0 4.41e-01 95.7% 100.0%
3419625 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 44.0 3.61e-01 97.8% 87.2%
3743890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.15e-01 73.9% 78.6%
3284172 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.51 45.0 3.50e-01 98.9% 76.1%
3437290 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.51 45.0 3.44e-01 98.9% 79.1%
5035692 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.87e-01 93.5% 70.4%
3880215 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 42.0 3.62e-01 96.7% 56.2%