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MH370477.2__AXC34608.1__X__00044
Bact-VirMH370477.2__AXC34608.1__X__00044
Identity
- Accession:
- MH370477 ↗
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autotranscriptaviridae›
Foetvirus›
Escherichia_phage_SRT7
TaxID: 2268589
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-56
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.61 | 42.0 | 4.26e-01 | 78.2% | 74.5% |
| 2wtzA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.61 | 49.0 | 3.37e-01 | 98.2% | 85.0% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 50.0 | 3.78e-01 | 98.2% | 63.7% |
| 4zm3B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 46.0 | 3.39e-01 | 83.6% | 71.8% |
| 4emyA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 46.0 | 3.26e-01 | 85.5% | 48.8% |
| 3l44A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 44.0 | 3.07e-01 | 80.0% | 59.0% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 39.0 | 3.04e-01 | 87.3% | 28.5% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 39.0 | 3.94e-01 | 80.0% | 71.9% |
| 2jxpA01 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.57 | 43.0 | 3.35e-01 | 87.3% | 77.3% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 43.0 | 4.07e-01 | 85.5% | 83.6% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.56 | 41.0 | 2.61e-01 | 81.8% | 17.1% |
| 2a6mA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.56 | 47.0 | 3.61e-01 | 100.0% | 40.8% |
| 1svvB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 48.0 | 4.10e-01 | 100.0% | 85.9% |
| 4eq8A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.55 | 40.0 | 2.96e-01 | 80.0% | 31.0% |
| 4pphA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.55 | 45.0 | 3.14e-01 | 94.5% | 47.2% |
| 3zrpA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 48.0 | 3.75e-01 | 100.0% | 72.3% |
| 4huzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 41.0 | 2.99e-01 | 85.5% | 30.7% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 41.0 | 3.94e-01 | 89.1% | 86.6% |
| 2fgtA03 | 3.30.310.160 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 | 0.54 | 45.0 | 3.49e-01 | 98.2% | 84.4% |
| 2mjlA00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.53 | 43.0 | 3.10e-01 | 100.0% | 81.2% |
| 3qv0A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.53 | 42.0 | 3.05e-01 | 90.9% | 76.5% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.53 | 39.0 | 3.69e-01 | 83.6% | 91.4% |
| 2ei0A02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 40.0 | 3.05e-01 | 89.1% | 32.9% |
| 2z67A00 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 46.0 | 2.75e-01 | 100.0% | 49.0% |
| 2d3jA00 | 2.60.40.2170 | Mainly Beta › Sandwich › Immunoglobulin-like › Wnt, WIF domain | 0.52 | 40.0 | 3.03e-01 | 89.1% | 80.9% |
| 3t4nA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 41.0 | 3.60e-01 | 96.4% | 89.6% |
| 1em2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 46.0 | 3.03e-01 | 98.2% | 71.5% |
| 3nx3A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 45.0 | 3.38e-01 | 100.0% | 57.4% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.51 | 40.0 | 2.82e-01 | 89.1% | 54.7% |
| 3qokA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 37.0 | 3.26e-01 | 83.6% | 100.0% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.51 | 40.0 | 3.84e-01 | 92.7% | 80.3% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.51 | 40.0 | 3.47e-01 | 94.5% | 68.4% |
| 2oa9B02 | 3.30.70.3570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain | 0.51 | 38.0 | 3.07e-01 | 87.3% | 53.5% |
| 2pb2B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 44.0 | 3.31e-01 | 100.0% | 60.6% |
| 1kw3B02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 37.0 | 2.89e-01 | 87.3% | 37.0% |
| 2jisA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 41.0 | 2.82e-01 | 100.0% | 42.7% |
| 3ihjA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 45.0 | 3.16e-01 | 100.0% | 52.5% |
| 2z61A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 42.0 | 3.11e-01 | 100.0% | 52.8% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.50 | 37.0 | 3.16e-01 | 83.6% | 50.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3656139 | 64.1.1.8 ↗ | beta meanders › WW domain-like › WW domain › WW domain › DUF7028 | 0.68 | 55.0 | 5.43e-01 | 100.0% | 86.7% |
| 4948381 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.68 | 57.0 | 4.85e-01 | 94.5% | 81.1% |
| 3288021 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.65 | 52.0 | 3.68e-01 | 90.9% | 95.0% |
| None | — | 0.65 | 56.0 | 3.50e-01 | 100.0% | 79.8% | |
| 3902426 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.62 | 51.0 | 3.44e-01 | 92.7% | 95.8% |
| 4194046 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.62 | 53.0 | 3.70e-01 | 100.0% | 83.7% |
| 3757382 | 206.1.1.38 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › FAM198 | 0.61 | 43.0 | 2.65e-01 | 74.5% | 75.9% |
| 4175050 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 45.0 | 3.60e-01 | 80.0% | 99.1% |
| 3691625 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.59 | 45.0 | 2.72e-01 | 85.5% | 13.6% |
| 5074781 | 241.9.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 | 0.59 | 48.0 | 3.73e-01 | 92.7% | 70.2% |
| 5067143 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 46.0 | 3.56e-01 | 85.5% | 85.2% |
| 3203885 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.57 | 45.0 | 3.28e-01 | 92.7% | 56.6% |
| 3493300 | 331.9.1.9 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 | 0.57 | 49.0 | 3.77e-01 | 100.0% | 60.0% |
| 4975431 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 42.0 | 3.73e-01 | 85.5% | 74.4% |
| 4185615 | 4.1.1.331 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4708 | 0.56 | 46.0 | 3.67e-01 | 94.5% | 95.0% |
| 5027639 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.56 | 43.0 | 2.54e-01 | 83.6% | 26.3% |
| 5055761 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.56 | 49.0 | 3.62e-01 | 98.2% | 89.3% |
| 4499439 | 7516.1.1.10 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CofC | 0.56 | 49.0 | 3.19e-01 | 100.0% | 46.8% |
| 3789276 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.55 | 48.0 | 3.87e-01 | 100.0% | 86.4% |
| 1193916 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.55 | 48.0 | 3.95e-01 | 98.2% | 83.2% |
| 5045944 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.55 | 40.0 | 3.42e-01 | 85.5% | 85.7% |
| 4598415 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.54 | 48.0 | 3.27e-01 | 100.0% | 38.0% |
| 3234981 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.54 | 48.0 | 3.21e-01 | 100.0% | 95.7% |
| 3925491 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 47.0 | 3.16e-01 | 100.0% | 94.1% |
| 4606701 | 7556.1.1.1 ↗ | a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C | 0.53 | 41.0 | 2.64e-01 | 94.5% | 64.0% |
| 3802552 | 601.1.1.91 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 | 0.53 | 47.0 | 3.32e-01 | 100.0% | 60.0% |
| 2534080 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 47.0 | 3.72e-01 | 100.0% | 78.2% |
| 3529971 | 327.11.2.18 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › DTX3L_KH-like | 0.52 | 42.0 | 3.79e-01 | 100.0% | 63.7% |
| 3708221 | 633.23.1.23 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin | 0.52 | 45.0 | 3.19e-01 | 100.0% | 88.5% |
| 3659633 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.52 | 40.0 | 3.39e-01 | 85.5% | 57.9% |
| 5830 | 330.7.1.1 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › DUF905 | 0.51 | 40.0 | 3.84e-01 | 92.7% | 80.3% |
| 5072982 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.51 | 45.0 | 3.32e-01 | 100.0% | 86.7% |
| 224373 | 3016.1.1.13 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SepSecS | 0.51 | 45.0 | 3.61e-01 | 100.0% | 86.2% |
| 5832 | 4292.1.1.1 ↗ | a+b two layers › FlaG-like › FlaG-related › FlaG-related › FlaG | 0.51 | 39.0 | 3.34e-01 | 94.5% | 61.5% |
| 5074905 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.50 | 42.0 | 3.35e-01 | 92.7% | 98.2% |
| 4936358 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.50 | 42.0 | 3.16e-01 | 92.7% | 46.9% |