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MH371109.1__AXC36184.1__SEA_LYELL_80__00077

Bact-Vir

MH371109.1__AXC36184.1__SEA_LYELL_80__00077

Identity

Accession:
MH371109 ↗
Kingdom:
phage

Quality

89.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Lyell

TaxID: 2250351

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-142
PDB
Domain cluster: rep: rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00010__D13-117
D2 medium residues 173-199_341-437
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.69 39.0 4.93e-01 78.2% 94.4%
1s68A01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.64 50.0 5.26e-01 82.3% 100.0%
3cmgA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 4.14e-01 78.2% 92.0%
2wv3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 4.28e-01 78.2% 96.6%
2iepA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 4.07e-01 78.2% 89.6%
7ahsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 4.21e-01 77.4% 97.7%
5oj2B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 4.10e-01 78.2% 96.5%
1ha6A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 23.0 2.97e-01 79.0% 68.6%
3rfrA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.53 40.0 3.89e-01 79.8% 96.3%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 4.08e-01 79.8% 87.3%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.52 28.0 2.67e-01 84.7% 40.0%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 4.11e-01 79.8% 97.8%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 26.0 2.91e-01 82.3% 60.0%
5eo9B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 4.08e-01 78.2% 95.8%
2pttB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 4.18e-01 82.3% 98.1%
5oj2A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.98e-01 79.8% 98.9%
3oq3B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.92e-01 81.5% 86.5%
1o75A03 2.60.40.1300 Mainly Beta › Sandwich › Immunoglobulin-like › Penicillin-binding protein Tp47, domain C 0.51 39.0 3.88e-01 81.5% 100.0%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 23.0 2.54e-01 73.4% 50.0%
2druA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 4.21e-01 82.3% 98.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3573816 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.60 37.0 4.41e-01 77.4% 90.6%
3267963 11.1.1.1309 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28707 0.53 39.0 4.36e-01 80.6% 100.0%
4957564 11.1.1.39 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_1 0.52 37.0 4.22e-01 80.6% 96.8%
2029625 896.2.1.1 ↗ a+b two layers › SRP9/14-like › Cell wall binding protein cwp8 domain 3 › Cell wall binding protein cwp8 domain 3 › Cwp8_D3 0.52 33.0 3.69e-01 80.6% 80.8%
1221818 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.52 35.0 4.04e-01 79.0% 94.6%
3495949 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 23.0 2.71e-01 95.2% 58.9%
3396382 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.83e-01 78.2% 96.7%
D3 medium residues 200-340
PDB
Domain cluster: rep: MN062701.1__QDP43902.1__SEA_DALLAS_157__00157__D554-691