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MH375644.1__AXC34481.1__X__00112

Bact-Vir

MH375644.1__AXC34481.1__X__00112

Identity

Accession:
MH375644 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-95
PDB
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.79 64.0 4.33e-01 95.7% 25.4%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.75 55.0 4.22e-01 88.6% 36.3%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.74 68.0 5.25e-01 100.0% 80.4%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 54.0 4.21e-01 77.1% 81.0%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.72 59.0 5.74e-01 88.6% 88.3%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.72 65.0 4.81e-01 100.0% 96.6%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.72 64.0 5.32e-01 98.6% 95.0%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.72 59.0 4.93e-01 90.0% 53.4%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.71 56.0 4.52e-01 84.3% 72.5%
3b7kC02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.71 57.0 4.88e-01 87.1% 98.2%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.70 58.0 4.37e-01 91.4% 40.8%
1tk1A00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.69 61.0 4.35e-01 100.0% 82.6%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.69 52.0 5.46e-01 88.6% 86.2%
4hzoA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 57.0 3.73e-01 90.0% 36.9%
4rljA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 58.0 4.59e-01 92.9% 98.6%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.69 61.0 4.71e-01 98.6% 67.7%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 55.0 4.66e-01 87.1% 89.7%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.68 50.0 4.18e-01 80.0% 64.0%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.67 54.0 4.35e-01 87.1% 53.3%
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.67 60.0 3.76e-01 100.0% 34.8%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.67 61.0 4.90e-01 100.0% 55.6%
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.67 57.0 3.59e-01 100.0% 24.8%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.67 55.0 4.06e-01 92.9% 48.2%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.66 61.0 3.95e-01 100.0% 47.8%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 55.0 4.32e-01 94.3% 74.0%
3qooA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 56.0 4.50e-01 92.9% 83.6%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.66 50.0 3.63e-01 81.4% 64.1%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 55.0 4.10e-01 92.9% 75.1%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 54.0 4.14e-01 91.4% 67.7%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 57.0 4.26e-01 95.7% 77.6%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 49.0 3.35e-01 85.7% 46.7%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 56.0 4.60e-01 100.0% 88.2%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.63 54.0 3.46e-01 100.0% 25.6%
3f7sA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 4.21e-01 94.3% 76.1%
1ff9A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 50.0 3.83e-01 91.4% 87.1%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.62 53.0 4.22e-01 100.0% 65.2%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 52.0 4.29e-01 94.3% 86.8%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.62 52.0 4.21e-01 94.3% 77.0%
1q42A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 50.0 3.93e-01 91.4% 84.3%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.62 53.0 4.75e-01 95.7% 82.7%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 51.0 3.84e-01 92.9% 79.1%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 56.0 4.47e-01 100.0% 66.2%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.61 50.0 4.02e-01 92.9% 72.2%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 4.03e-01 90.0% 83.5%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 4.04e-01 92.9% 83.6%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 48.0 3.55e-01 90.0% 88.3%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.59 47.0 3.67e-01 90.0% 50.6%
5e1vB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.59 47.0 3.28e-01 92.9% 40.1%
3h2gA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 52.0 3.50e-01 100.0% 54.5%
2cwzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 50.0 4.03e-01 95.7% 85.4%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 4.23e-01 90.0% 87.0%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 3.78e-01 92.9% 82.0%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 4.06e-01 98.6% 80.5%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.55 46.0 3.28e-01 100.0% 32.0%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.54 44.0 3.65e-01 100.0% 63.8%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.58e-01 94.3% 75.4%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.33e-01 92.9% 73.9%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 3.90e-01 100.0% 84.3%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.67e-01 95.7% 82.6%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.63e-01 95.7% 77.3%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 3.99e-01 100.0% 89.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964265 5084.1.1.43 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Autotransporter 0.82 76.0 5.89e-01 100.0% 74.5%
3964155 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.81 73.0 4.82e-01 97.1% 40.3%
3164124 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.80 74.0 6.09e-01 100.0% 66.7%
3395729 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.78 71.0 5.37e-01 100.0% 56.9%
3968185 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.77 66.0 3.95e-01 92.9% 14.5%
3964794 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.77 70.0 4.75e-01 100.0% 31.2%
4014154 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.75 54.0 4.19e-01 75.7% 87.6%
3839285 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.74 62.0 4.49e-01 90.0% 38.9%
1308671 222.1.1.20 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.73 57.0 4.62e-01 84.3% 93.1%
3381230 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.72 66.0 5.56e-01 100.0% 79.1%
3415714 79.1.1.23 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Chitin_bind_4 0.71 57.0 5.64e-01 98.6% 80.0%
3268067 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.70 48.0 3.85e-01 78.6% 37.0%
3268473 243.1.1.87 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_SigF 0.69 52.0 4.33e-01 81.4% 97.6%
3484227 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.68 59.0 4.46e-01 97.1% 58.2%
4305692 5084.1.1.34 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › DUF2715 0.67 57.0 4.43e-01 100.0% 68.0%
28449 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.67 61.0 3.96e-01 100.0% 47.8%
3735831 9.1.1.37 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 0.66 55.0 4.04e-01 94.3% 99.0%
3512269 79.1.1.16 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 0.66 58.0 5.31e-01 97.1% 77.8%
4315977 5084.5.1.37 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C 0.65 56.0 3.84e-01 98.6% 33.5%
3787831 243.1.1.50 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind 0.65 54.0 3.69e-01 91.4% 77.6%
3959921 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 52.0 5.05e-01 87.1% 81.0%
3242736 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 53.0 4.24e-01 91.4% 95.0%
4466411 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.63 56.0 4.21e-01 98.6% 49.7%
5065294 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.63 54.0 4.17e-01 100.0% 46.5%
2491331 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 54.0 4.20e-01 100.0% 42.1%
4984287 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 50.0 3.73e-01 88.6% 35.3%
3716267 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.62 54.0 3.51e-01 100.0% 27.4%
3228525 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.62 53.0 4.62e-01 97.1% 77.3%
5047908 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.62 41.0 2.62e-01 72.9% 14.2%
3811744 243.1.1.49 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 0.61 51.0 4.16e-01 95.7% 73.6%
2033779 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.60 49.0 4.12e-01 92.9% 84.3%
3285746 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.60 49.0 3.90e-01 94.3% 72.3%
3254046 243.1.1.9 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 0.59 49.0 3.94e-01 97.1% 71.4%
4980169 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.59 41.0 2.65e-01 72.9% 86.0%
3238606 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 47.0 4.03e-01 88.6% 55.7%
5037172 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 50.0 3.98e-01 100.0% 83.7%
3212332 243.1.1.85 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 0.59 50.0 4.11e-01 95.7% 80.8%
5077936 7579.1.1.27 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 0.58 50.0 3.34e-01 100.0% 43.6%
3289546 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 49.0 3.70e-01 97.1% 38.8%
3937062 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 49.0 3.72e-01 100.0% 93.9%
4971710 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.57 49.0 3.24e-01 100.0% 43.5%
3960172 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 45.0 3.83e-01 90.0% 94.9%
6392 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.54 45.0 3.67e-01 95.7% 82.6%
3581448 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 44.0 3.81e-01 95.7% 63.5%