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MH382836.1__AXC36448.1__phCDa_4__00004
Bact-VirMH382836.1__AXC36448.1__phCDa_4__00004
Identity
- Accession:
- MH382836 ↗
- Kingdom:
- phage
Quality
82.2
mean pLDDT
Taxonomy
TaxID: 2268587
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-75
Domain cluster:
rep: MN988552.1__QIG76176.1__EVC24_155__00155__D90-159
CATH (58)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.73 | 53.0 | 5.52e-01 | 76.7% | 83.6% |
| 5jgfA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.73 | 56.0 | 4.50e-01 | 83.6% | 75.9% |
| 4il7A00 | 2.60.120.1300 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 43.0 | 4.10e-01 | 82.2% | 51.8% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.71 | 57.0 | 5.84e-01 | 87.7% | 93.0% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.70 | 54.0 | 5.28e-01 | 82.2% | 82.3% |
| 4emeC02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.70 | 52.0 | 4.33e-01 | 82.2% | 74.8% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.70 | 56.0 | 5.53e-01 | 89.0% | 84.2% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.69 | 53.0 | 4.40e-01 | 80.8% | 55.3% |
| 1vq3B00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.69 | 50.0 | 4.82e-01 | 76.7% | 100.0% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.69 | 51.0 | 5.55e-01 | 84.9% | 95.0% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 49.0 | 4.41e-01 | 82.2% | 55.1% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.68 | 55.0 | 5.44e-01 | 87.7% | 96.1% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.67 | 49.0 | 4.27e-01 | 76.7% | 60.6% |
| 1nc7A00 | 2.60.290.11 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like | 0.67 | 46.0 | 3.95e-01 | 79.5% | 44.8% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 41.0 | 3.17e-01 | 80.8% | 27.4% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.66 | 48.0 | 4.30e-01 | 78.1% | 83.0% |
| 1x9tA02 | 3.90.1620.10 | Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 | 0.66 | 50.0 | 3.44e-01 | 84.9% | 42.9% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.65 | 48.0 | 4.10e-01 | 78.1% | 58.8% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.65 | 50.0 | 4.13e-01 | 86.3% | 47.2% |
| 2vpaA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 46.0 | 3.37e-01 | 78.1% | 29.9% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.63 | 47.0 | 4.35e-01 | 80.8% | 62.5% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 44.0 | 3.94e-01 | 79.5% | 52.0% |
| 4aw7A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.62 | 39.0 | 3.35e-01 | 79.5% | 39.0% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 46.0 | 3.62e-01 | 79.5% | 42.8% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.61 | 46.0 | 3.75e-01 | 91.8% | 42.0% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.61 | 45.0 | 3.95e-01 | 80.8% | 52.3% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 42.0 | 3.89e-01 | 72.6% | 100.0% |
| 1t3yA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.60 | 36.0 | 2.98e-01 | 74.0% | 32.8% |
| 7y8sB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 40.0 | 3.81e-01 | 79.5% | 57.5% |
| 4ktbA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 49.0 | 3.88e-01 | 93.2% | 88.1% |
| 1hq6B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.59 | 50.0 | 3.60e-01 | 97.3% | 39.0% |
| 2hdeA01 | 3.10.20.550 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit | 0.59 | 43.0 | 3.69e-01 | 78.1% | 85.4% |
| 1r0uA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 45.0 | 3.63e-01 | 82.2% | 93.0% |
| 4hscX04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.58 | 42.0 | 3.71e-01 | 83.6% | 50.9% |
| 4kyxA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 48.0 | 3.95e-01 | 93.2% | 86.3% |
| 1xo8A00 | 2.60.40.1820 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 43.0 | 3.43e-01 | 79.5% | 48.3% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.57 | 43.0 | 3.76e-01 | 82.2% | 53.2% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 42.0 | 3.87e-01 | 82.2% | 62.1% |
| 5hccB03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 39.0 | 3.42e-01 | 76.7% | 54.5% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.55 | 47.0 | 3.63e-01 | 98.6% | 72.6% |
| 1r0mA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 46.0 | 3.77e-01 | 90.4% | 100.0% |
| 3i3tA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 46.0 | 3.02e-01 | 91.8% | 34.0% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 46.0 | 3.03e-01 | 94.5% | 44.0% |
| 3waiA02 | 2.60.40.3390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 3.71e-01 | 78.1% | 61.3% |
| 2b0vA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 44.0 | 3.58e-01 | 91.8% | 81.8% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 43.0 | 3.32e-01 | 90.4% | 71.5% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 44.0 | 3.47e-01 | 95.9% | 95.4% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.54 | 41.0 | 3.55e-01 | 83.6% | 76.1% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 43.0 | 3.11e-01 | 90.4% | 91.8% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 43.0 | 2.87e-01 | 91.8% | 31.3% |
| 4g29A00 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.53 | 46.0 | 3.59e-01 | 100.0% | 67.5% |
| 3gtyX02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.52 | 41.0 | 3.96e-01 | 86.3% | 100.0% |
| 6heiA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 41.0 | 2.72e-01 | 90.4% | 30.0% |
| 1a6cA02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 37.0 | 2.95e-01 | 79.5% | 61.2% |
| 3it8D01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.51 | 40.0 | 2.99e-01 | 84.9% | 96.1% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.51 | 41.0 | 3.53e-01 | 94.5% | 79.5% |
| 4hsaF02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.50 | 40.0 | 3.62e-01 | 89.0% | 61.9% |
| 4ll1C02 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.53e-01 | 98.6% | 55.7% |
ECOD (77)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.79 | 57.0 | 6.42e-01 | 75.3% | 100.0% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.79 | 58.0 | 6.39e-01 | 78.1% | 100.0% |
| 3411558 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.76 | 57.0 | 4.61e-01 | 80.8% | 51.4% |
| 3965010 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.74 | 60.0 | 5.59e-01 | 87.7% | 80.0% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.73 | 56.0 | 6.00e-01 | 82.2% | 98.4% |
| 223776 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.73 | 58.0 | 5.86e-01 | 84.9% | 94.4% |
| 5023972 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 49.0 | 4.70e-01 | 82.2% | 60.0% |
| 3996758 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.73 | 61.0 | 4.97e-01 | 91.8% | 85.9% |
| 3227513 | 3115.1.1.3 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › NRF | 0.73 | 60.0 | 5.35e-01 | 91.8% | 99.0% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.72 | 56.0 | 5.91e-01 | 82.2% | 95.3% |
| 5074648 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.72 | 60.0 | 5.97e-01 | 90.4% | 100.0% |
| 4942818 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.72 | 56.0 | 4.51e-01 | 83.6% | 52.9% |
| 3905094 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.72 | 55.0 | 4.43e-01 | 80.8% | 51.1% |
| 4943401 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.72 | 59.0 | 5.63e-01 | 90.4% | 90.6% |
| 3345090 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.71 | 57.0 | 5.03e-01 | 87.7% | 67.6% |
| 3508212 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.71 | 58.0 | 5.95e-01 | 87.7% | 97.1% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.70 | 58.0 | 5.59e-01 | 90.4% | 79.5% |
| 3732197 | 11.1.1.643 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 | 0.70 | 47.0 | 4.12e-01 | 82.2% | 46.4% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.70 | 57.0 | 5.06e-01 | 89.0% | 71.4% |
| 5030993 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.70 | 58.0 | 5.63e-01 | 90.4% | 92.5% |
| 5000510 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.70 | 58.0 | 5.83e-01 | 91.8% | 98.7% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.70 | 57.0 | 5.10e-01 | 89.0% | 72.3% |
| 1867336 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.70 | 52.0 | 5.57e-01 | 80.8% | 96.8% |
| 2106285 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.70 | 57.0 | 4.98e-01 | 89.0% | 68.5% |
| 2512518 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 57.0 | 5.10e-01 | 89.0% | 72.3% |
| 4996552 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.69 | 60.0 | 5.73e-01 | 95.9% | 94.1% |
| 5013194 | 3115.4.1.0 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 | 0.69 | 49.0 | 5.53e-01 | 76.7% | 100.0% |
| 4983090 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.69 | 56.0 | 5.50e-01 | 90.4% | 94.9% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.68 | 59.0 | 3.84e-01 | 100.0% | 47.6% |
| 4418109 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.68 | 51.0 | 4.07e-01 | 80.8% | 42.7% |
| 4084879 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.67 | 55.0 | 5.27e-01 | 91.8% | 80.0% |
| 4673268 | 3115.1.1.8 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Usg | 0.67 | 49.0 | 5.36e-01 | 78.1% | 100.0% |
| 3350520 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.67 | 59.0 | 3.73e-01 | 100.0% | 33.6% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.66 | 53.0 | 5.55e-01 | 90.4% | 100.0% |
| 4939155 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.65 | 49.0 | 4.17e-01 | 80.8% | 51.3% |
| 4977520 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.65 | 48.0 | 4.26e-01 | 80.8% | 55.5% |
| 4035839 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.64 | 47.0 | 4.13e-01 | 79.5% | 53.0% |
| 4976844 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.64 | 54.0 | 4.19e-01 | 94.5% | 52.1% |
| 3505298 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 49.0 | 5.12e-01 | 86.3% | 96.9% |
| 5049412 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.64 | 48.0 | 4.03e-01 | 80.8% | 48.8% |
| 4568546 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.63 | 47.0 | 4.05e-01 | 80.8% | 50.4% |
| 4177322 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.63 | 47.0 | 3.89e-01 | 80.8% | 45.0% |
| 4926832 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.63 | 47.0 | 3.96e-01 | 80.8% | 48.0% |
| 3179842 | 11.1.1.644 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 | 0.63 | 46.0 | 3.97e-01 | 87.7% | 48.3% |
| 4964887 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.62 | 46.0 | 3.96e-01 | 79.5% | 50.0% |
| 3490255 | 11.1.4.114 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 | 0.62 | 41.0 | 3.78e-01 | 82.2% | 50.0% |
| 3204836 | 2492.1.1.32 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › OTT_1508_deam | 0.62 | 48.0 | 3.78e-01 | 83.6% | 42.6% |
| 185776 | 10.2.1.52 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › DUF4621 | 0.62 | 47.0 | 3.62e-01 | 79.5% | 46.3% |
| 3217546 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.62 | 48.0 | 4.09e-01 | 82.2% | 54.8% |
| 3619496 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 52.0 | 3.34e-01 | 94.5% | 32.1% |
| 3896560 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.62 | 54.0 | 4.17e-01 | 100.0% | 56.5% |
| 3484366 | 284.1.2.1 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C | 0.61 | 47.0 | 4.27e-01 | 83.6% | 100.0% |
| 3555863 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.61 | 46.0 | 3.93e-01 | 89.0% | 48.8% |
| 4333681 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 45.0 | 3.87e-01 | 80.8% | 50.0% |
| 3237716 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.60 | 45.0 | 3.67e-01 | 80.8% | 47.9% |
| 3165307 | 5084.5.4.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X | 0.60 | 45.0 | 2.80e-01 | 80.8% | 83.9% |
| 3914225 | 10.32.1.283 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TGFb_propeptide | 0.59 | 44.0 | 3.66e-01 | 80.8% | 45.2% |
| 4947414 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 44.0 | 3.79e-01 | 80.8% | 57.5% |
| 3873657 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.59 | 45.0 | 3.24e-01 | 83.6% | 50.2% |
| 3223718 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.58 | 44.0 | 3.66e-01 | 82.2% | 50.0% |
| 4942869 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.58 | 48.0 | 3.81e-01 | 98.6% | 81.8% |
| 5046039 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.58 | 43.0 | 3.69e-01 | 79.5% | 53.0% |
| 3213637 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.57 | 42.0 | 3.54e-01 | 80.8% | 50.0% |
| 3389726 | 868.1.1.5 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 | 0.57 | 48.0 | 3.59e-01 | 98.6% | 62.9% |
| 3221414 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.55 | 45.0 | 2.90e-01 | 89.0% | 55.2% |
| 119269 | 2492.1.1.21 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC2 | 0.55 | 45.0 | 3.36e-01 | 90.4% | 66.7% |
| 4055104 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.54 | 41.0 | 3.94e-01 | 82.2% | 90.6% |
| 4943909 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 39.0 | 3.44e-01 | 78.1% | 49.6% |
| 4452107 | 1144.1.1.1 ↗ | beta sandwiches › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Hydantoinase_B | 0.53 | 41.0 | 2.92e-01 | 82.2% | 71.6% |
| 2570007 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.53 | 45.0 | 4.14e-01 | 98.6% | 92.0% |
| 3265857 | 299.1.1.0 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain | 0.53 | 43.0 | 3.79e-01 | 90.4% | 71.8% |
| 3483062 | 221.1.1.116 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 | 0.53 | 38.0 | 3.33e-01 | 78.1% | 93.3% |
| 3797443 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 46.0 | 3.63e-01 | 97.3% | 61.9% |
| 3382614 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 43.0 | 2.66e-01 | 98.6% | 31.3% |
| 4321103 | 11.1.1.913 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29899 | 0.52 | 42.0 | 3.14e-01 | 90.4% | 55.9% |
| 318718 | 221.1.1.30 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAP18 | 0.51 | 38.0 | 3.14e-01 | 83.6% | 70.9% |
| 3832080 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 38.0 | 2.36e-01 | 87.7% | 13.9% |
D2
high
residues 88-135
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jrmA00 | 1.10.10.620 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain | 0.75 | 63.0 | 5.88e-01 | 100.0% | 75.0% |
| 1kqfC00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.72 | 51.0 | 3.28e-01 | 75.0% | 73.6% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.71 | 52.0 | 5.34e-01 | 77.1% | 100.0% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.71 | 54.0 | 4.96e-01 | 81.2% | 67.2% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 54.0 | 4.30e-01 | 81.2% | 42.9% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.70 | 51.0 | 3.93e-01 | 77.1% | 38.9% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 62.0 | 5.55e-01 | 100.0% | 100.0% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.69 | 52.0 | 4.32e-01 | 81.2% | 67.1% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.69 | 50.0 | 3.23e-01 | 77.1% | 72.9% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.69 | 53.0 | 4.83e-01 | 81.2% | 65.6% |
| 3t98B00 | 6.10.140.1350 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 52.0 | 4.23e-01 | 81.2% | 54.7% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 54.0 | 5.01e-01 | 85.4% | 76.7% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 53.0 | 4.25e-01 | 85.4% | 84.8% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.67 | 51.0 | 4.25e-01 | 81.2% | 50.0% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.66 | 56.0 | 4.08e-01 | 95.8% | 59.4% |
| 4ep4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.66 | 58.0 | 4.00e-01 | 100.0% | 89.2% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 50.0 | 4.94e-01 | 83.3% | 84.3% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 47.0 | 3.77e-01 | 81.2% | 43.2% |
| 6wilA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.63 | 42.0 | 3.53e-01 | 70.8% | 48.8% |
| 4xukA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 47.0 | 2.90e-01 | 87.5% | 22.0% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 49.0 | 3.75e-01 | 97.9% | 84.2% |
| 1uhsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 50.0 | 4.87e-01 | 100.0% | 90.7% |
| 4dkcB00 | 1.20.1250.80 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 | 0.58 | 51.0 | 3.54e-01 | 100.0% | 52.5% |
| 1ikpA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.57 | 49.0 | 3.35e-01 | 93.8% | 60.1% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 45.0 | 3.68e-01 | 91.7% | 48.3% |
| 4pkwA02 | 1.10.2030.10 | Mainly Alpha › Orthogonal Bundle › Anthrax toxin lethal factor, domain 3, chain A › Anthrax toxin lethal factor, domain 3, chain A | 0.55 | 44.0 | 4.04e-01 | 89.6% | 73.0% |
| 4am6A03 | 3.30.420.580 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.51 | 43.0 | 2.77e-01 | 100.0% | 43.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4407662 | 6028.1.1.1 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor › RMF | 0.88 | 75.0 | 6.92e-01 | 100.0% | 73.3% |
| 5047797 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.75 | 56.0 | 4.76e-01 | 79.2% | 73.3% |
| 3542362 | 389.1.1.127 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ANATO | 0.75 | 64.0 | 6.41e-01 | 100.0% | 94.0% |
| 3739377 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.73 | 56.0 | 3.38e-01 | 81.2% | 23.4% |
| 3509201 | 1008.1.1.1 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36_C | 0.72 | 51.0 | 4.23e-01 | 75.0% | 56.5% |
| 3742018 | 7094.1.1.2 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 | 0.70 | 51.0 | 4.09e-01 | 79.2% | 89.5% |
| 4249161 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.68 | 51.0 | 4.62e-01 | 81.2% | 61.5% |
| 4524127 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.66 | 58.0 | 4.31e-01 | 100.0% | 40.8% |
| 4002070 | 11.1.1.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD | 0.66 | 54.0 | 3.25e-01 | 97.9% | 12.9% |
| 3448849 | 605.8.1.5 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › Med26 | 0.65 | 47.0 | 4.29e-01 | 77.1% | 64.6% |
| 3250864 | 4033.1.1.5 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_ox_N | 0.65 | 55.0 | 4.34e-01 | 100.0% | 53.6% |
| 3935426 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.65 | 49.0 | 3.90e-01 | 81.2% | 42.1% |
| 3497236 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 55.0 | 3.42e-01 | 97.9% | 60.0% |
| 4549262 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.62 | 52.0 | 3.16e-01 | 89.6% | 18.2% |
| 4029030 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.58 | 52.0 | 4.07e-01 | 100.0% | 73.0% |
| 3402853 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.58 | 42.0 | 4.23e-01 | 83.3% | 82.0% |
| 4041350 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.53 | 39.0 | 3.03e-01 | 93.8% | 55.2% |