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MH382836.1__AXC36468.1__phCDa_24__00024

Bact-Vir

MH382836.1__AXC36468.1__phCDa_24__00024

Identity

Accession:
MH382836 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Shizishanvirus› Pseudomonas_phage_phCDa

TaxID: 2268587

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-115
PDB
Domain cluster: rep: OY978848.1__CAK6597536.1__K21LAMBDA1_LOCUS57__00057__D8-131
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.63 33.0 4.05e-01 100.0% 80.9%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 36.0 4.21e-01 100.0% 92.8%
5d8nA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.59 52.0 4.36e-01 98.2% 83.5%
3c18A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 38.0 3.75e-01 100.0% 61.7%
1uqtA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 43.0 3.32e-01 77.1% 49.0%
4p02B04 3.30.379.30 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › 0.57 44.0 3.90e-01 81.7% 69.2%
4zi6C01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.56 50.0 4.38e-01 99.1% 82.2%
3ragB00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.56 47.0 3.75e-01 91.7% 85.8%
3safB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 39.0 2.89e-01 72.5% 58.9%
2nrkA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 47.0 4.11e-01 97.2% 80.6%
1ukcB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 37.0 2.41e-01 71.6% 44.2%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.53 32.0 3.83e-01 83.5% 91.5%
1ryhA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 3.29e-01 78.9% 88.9%
1bxgA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.50 37.0 3.50e-01 88.1% 63.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3887584 2004.1.1.118 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.62 48.0 3.16e-01 82.6% 84.0%
3726384 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.60 41.0 4.50e-01 96.3% 85.6%
5049366 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.58 45.0 3.68e-01 82.6% 86.2%
3889847 2004.1.1.118 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.55 45.0 3.57e-01 90.8% 100.0%
4034241 2498.1.1.60 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2268 0.54 42.0 3.49e-01 85.3% 96.7%
3289917 141.1.1.11 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › DUF5685 0.54 48.0 3.57e-01 100.0% 59.7%
5006508 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 31.0 3.61e-01 89.0% 82.4%
4657309 2011.2.1.11 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC1 0.53 47.0 3.68e-01 99.1% 85.4%
3808206 2007.5.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase 0.53 45.0 3.14e-01 90.8% 55.2%
3733520 316.1.1.11 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.53 45.0 3.89e-01 96.3% 73.3%
3500612 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 46.0 3.33e-01 100.0% 86.4%
3933809 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 44.0 4.06e-01 92.7% 75.7%
4983215 2012.1.1.1 ↗ a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like › Memo 0.51 43.0 3.24e-01 93.6% 87.7%
4583055 316.1.1.11 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.51 44.0 3.92e-01 97.2% 79.4%
5051526 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.51 41.0 3.11e-01 89.0% 59.6%
5007658 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.51 32.0 3.07e-01 82.6% 51.9%