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MH399771.1__AXC37214.1__SEA_BYCHANCE_31__00031
Bact-VirMH399771.1__AXC37214.1__SEA_BYCHANCE_31__00031
Identity
- Accession:
- MH399771 ↗
- Kingdom:
- phage
Quality
90.4
mean pLDDT
Taxonomy
TaxID: 2250373
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-82
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.89 | 69.0 | 6.77e-01 | 93.8% | 76.5% |
| 4g54A02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.88 | 67.0 | 7.06e-01 | 92.6% | 88.9% |
| 1lbuA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.83 | 65.0 | 6.44e-01 | 92.6% | 78.6% |
| 7kdfB01 | 1.10.418.60 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Ncd80 complex, Nuf2 subunit | 0.65 | 46.0 | 3.85e-01 | 75.3% | 79.5% |
| 4p79A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.60 | 45.0 | 3.50e-01 | 81.5% | 80.7% |
| 1ui6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 40.0 | 3.06e-01 | 72.8% | 60.9% |
| 2lvsA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 25.0 | 3.10e-01 | 77.8% | 59.2% |
| 4j8dD00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 39.0 | 3.14e-01 | 76.5% | 87.7% |
| 5ysqB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 39.0 | 2.72e-01 | 77.8% | 55.4% |
| 4fp4A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 42.0 | 3.01e-01 | 88.9% | 38.3% |
| 8hw4A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.97e-01 | 88.9% | 49.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589440 | 144.1.1.7 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PF30262 | 0.88 | 69.0 | 5.59e-01 | 92.6% | 47.1% |
| 4011396 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.88 | 73.0 | 6.40e-01 | 93.8% | 61.9% |
| 3319740 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.85 | 66.0 | 6.56e-01 | 92.6% | 77.6% |
| 5019285 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.85 | 68.0 | 6.44e-01 | 95.1% | 71.6% |
| 3263339 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.85 | 69.0 | 7.20e-01 | 93.8% | 92.0% |
| 4173379 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.85 | 67.0 | 6.83e-01 | 93.8% | 83.7% |
| 3395 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 65.0 | 6.47e-01 | 92.6% | 79.5% |
| 3356981 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 65.0 | 6.55e-01 | 93.8% | 85.0% |
| 4096813 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 70.0 | 6.47e-01 | 93.8% | 78.0% |
| 2819638 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 62.0 | 5.46e-01 | 93.8% | 58.6% |
| 3201809 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.74 | 60.0 | 6.12e-01 | 93.8% | 88.7% |
| 3991492 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.59 | 42.0 | 3.10e-01 | 75.3% | 49.8% |
| 4101925 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.56 | 40.0 | 3.05e-01 | 74.1% | 40.0% |
| 3339411 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.56 | 38.0 | 3.25e-01 | 70.4% | 53.3% |
| 3608388 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.52 | 39.0 | 3.25e-01 | 79.0% | 67.6% |
| 3969924 | 109.4.1.65 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LppC | 0.52 | 35.0 | 2.53e-01 | 70.4% | 30.4% |
| 4000709 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.51 | 34.0 | 3.68e-01 | 71.6% | 80.0% |
| 4018068 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.51 | 37.0 | 2.42e-01 | 79.0% | 76.3% |
D2
high
residues 99-135
Domain cluster:
rep: NC_055811.1__YP_010103738.1__KNU69_gp37__00037__D41-77