←Back to structures

MH399779.1__AXC37915.1__SEA_JACKO_57__00054

Bact-Vir

MH399779.1__AXC37915.1__SEA_JACKO_57__00054

Identity

Accession:
MH399779 ↗
Kingdom:
phage

Quality

67.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Jacko

TaxID: 2250370

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 92-224
PDB
D2 medium residues 20-90
PDB
Domain cluster: rep: MW073100.1__QWT28912.1__vBMoxSR1_gp62__00062__D4-79
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.68 47.0 3.67e-01 73.2% 39.1%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 46.0 3.61e-01 74.6% 33.8%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.58 49.0 2.89e-01 100.0% 48.9%
2uyoA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 43.0 2.97e-01 88.7% 30.9%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 36.0 2.57e-01 74.6% 77.4%
1dqnA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 35.0 2.49e-01 71.8% 25.7%
1e2uA04 3.40.50.2030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 37.0 2.91e-01 81.7% 37.6%
4rflA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 35.0 2.92e-01 73.2% 46.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4419934 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.77 52.0 3.61e-01 70.4% 52.2%
3404650 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.68 48.0 3.71e-01 74.6% 38.1%
4201251 2006.1.1.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.68 48.0 3.22e-01 74.6% 21.5%
4032112 2006.1.1.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.68 48.0 3.23e-01 74.6% 23.4%
4004053 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.56 39.0 3.62e-01 74.6% 75.8%
3780567 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 38.0 2.51e-01 73.2% 50.6%
3927767 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 44.0 2.75e-01 98.6% 53.6%