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MH399779.1__AXC37950.1__SEA_JACKO_92__00089
Bact-VirMH399779.1__AXC37950.1__SEA_JACKO_92__00089
Identity
- Accession:
- MH399779 ↗
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-106
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s7jA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.72 | 45.0 | 4.15e-01 | 84.5% | 49.2% |
| 2otnB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.68 | 44.0 | 3.87e-01 | 87.4% | 45.9% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.64 | 31.0 | 3.53e-01 | 79.6% | 59.7% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 32.0 | 3.39e-01 | 79.6% | 52.1% |
| 1a79A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 33.0 | 3.34e-01 | 81.6% | 51.0% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 32.0 | 2.79e-01 | 79.6% | 32.9% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 32.0 | 4.10e-01 | 87.4% | 94.6% |
| 1vhkA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.60 | 39.0 | 4.47e-01 | 84.5% | 93.2% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.57 | 46.0 | 3.24e-01 | 87.4% | 28.0% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.57 | 45.0 | 3.23e-01 | 86.4% | 29.6% |
| 7kw0A02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.55 | 36.0 | 3.08e-01 | 88.3% | 40.5% |
| 1rpyB00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 31.0 | 3.31e-01 | 87.4% | 64.0% |
| 6lpwB01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 38.0 | 3.18e-01 | 88.3% | 40.6% |
| 3tqtB01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 36.0 | 3.46e-01 | 90.3% | 58.0% |
| 4g0bA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 38.0 | 3.04e-01 | 88.3% | 37.1% |
| 8dqoB01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.53 | 38.0 | 3.12e-01 | 88.3% | 40.4% |
| 1e4eA03 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 32.0 | 3.12e-01 | 87.4% | 50.0% |
| 4kreA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 42.0 | 3.20e-01 | 87.4% | 69.6% |
| 2xhgA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 35.0 | 2.94e-01 | 88.3% | 39.2% |
| 3k6oA02 | 2.60.40.2370 | Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain | 0.52 | 36.0 | 3.38e-01 | 100.0% | 55.1% |
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 34.0 | 3.24e-01 | 87.4% | 54.8% |
| 1euvA02 | 3.30.310.130 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related | 0.51 | 36.0 | 3.64e-01 | 93.2% | 72.4% |
| 4kr6A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.51 | 34.0 | 2.90e-01 | 84.5% | 40.9% |
| 3vasA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 40.0 | 3.00e-01 | 85.4% | 59.9% |
| 2azpA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 43.0 | 3.77e-01 | 95.1% | 65.6% |
| 5c40B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 39.0 | 2.85e-01 | 85.4% | 49.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3200317 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.73 | 51.0 | 3.90e-01 | 87.4% | 32.6% |
| 3627518 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.67 | 42.0 | 3.51e-01 | 84.5% | 36.1% |
| 4988784 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.66 | 37.0 | 3.41e-01 | 87.4% | 40.6% |
| 4928680 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 36.0 | 2.96e-01 | 79.6% | 28.4% |
| 3252502 | 2008.2.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 | 0.65 | 35.0 | 3.34e-01 | 80.6% | 43.5% |
| 4997258 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.65 | 39.0 | 3.40e-01 | 87.4% | 38.7% |
| 3605286 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.65 | 38.0 | 3.90e-01 | 79.6% | 60.0% |
| 3174811 | 2008.2.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 | 0.63 | 38.0 | 3.62e-01 | 89.3% | 50.4% |
| 3312553 | 222.1.1.5 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA | 0.63 | 47.0 | 4.47e-01 | 87.4% | 66.7% |
| 4042289 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.61 | 41.0 | 3.11e-01 | 87.4% | 27.3% |
| 4000167 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.61 | 43.0 | 3.81e-01 | 90.3% | 49.7% |
| 3739561 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.61 | 45.0 | 3.84e-01 | 89.3% | 47.9% |
| 3416893 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.58 | 40.0 | 3.13e-01 | 88.3% | 31.7% |
| 4862846 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.56 | 36.0 | 3.87e-01 | 89.3% | 76.4% |
| 2756766 | 2008.2.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 | 0.55 | 34.0 | 3.17e-01 | 87.4% | 46.3% |
| 4991587 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.55 | 35.0 | 3.28e-01 | 91.3% | 50.8% |
| 4940399 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.54 | 39.0 | 3.72e-01 | 92.2% | 65.3% |
| 5038038 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.54 | 35.0 | 3.46e-01 | 92.2% | 59.1% |
| 4956984 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 32.0 | 3.20e-01 | 93.2% | 60.0% |
| 5055143 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 35.0 | 3.29e-01 | 92.2% | 57.6% |
| 3738905 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.51 | 33.0 | 3.42e-01 | 86.4% | 69.0% |
| 3210459 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 38.0 | 3.19e-01 | 88.3% | 45.6% |
| 5061465 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 34.0 | 3.24e-01 | 92.2% | 56.8% |
| 5000619 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.50 | 35.0 | 3.43e-01 | 92.2% | 64.7% |