←Back to structures

MH412654.1__AXQ70440.1__X__00041

Bact-Vir

MH412654.1__AXQ70440.1__X__00041

Identity

Accession:
MH412654 ↗
Kingdom:
phage

Quality

56.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Tamkungvirus› Synechococcus_phage_S-T4

TaxID: 2268578

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 269-425
PDB
Domain cluster: rep: OR032571.1__WJZ48267.1__X__00077__D150-291
D2 high residues 483-648
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00010__D277-437
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zosB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 36.0 4.69e-01 77.1% 88.7%
1gqeA02 3.30.70.1660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 40.0 4.28e-01 88.0% 67.6%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 31.0 4.30e-01 87.3% 87.8%
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.66 36.0 4.75e-01 85.5% 98.9%
1kviA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 31.0 4.30e-01 77.1% 91.1%
4mt1A03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.66 38.0 4.79e-01 77.7% 94.9%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 33.0 4.43e-01 77.1% 96.2%
1zbtA02 3.30.70.1660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 39.0 4.01e-01 88.6% 61.3%
1jelP00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.64 34.0 4.55e-01 84.9% 98.8%
6w72A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 32.0 3.53e-01 88.0% 58.0%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 37.0 4.57e-01 77.1% 92.2%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 36.0 4.52e-01 77.1% 92.2%
3bdeB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 34.0 4.17e-01 77.1% 90.9%
1mwqA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.59 33.0 4.14e-01 77.1% 90.0%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 34.0 4.15e-01 77.1% 87.7%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 30.0 3.86e-01 87.3% 87.6%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.58 35.0 4.35e-01 73.5% 97.0%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.58 32.0 4.03e-01 88.6% 91.5%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 30.0 3.83e-01 88.0% 86.3%
1rjjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 33.0 3.90e-01 77.1% 82.9%
4e9jA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 25.0 3.58e-01 70.5% 94.2%
1vk3A04 3.30.70.1670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formylglycinamide ribonucleotide amidotransferase, C-terminal domain 0.56 29.0 3.77e-01 87.3% 87.5%
3daoA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.54 32.0 3.81e-01 74.1% 88.1%
3gb5A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.52 34.0 3.33e-01 72.9% 59.5%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4378266 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.69 37.0 3.15e-01 88.0% 32.7%
3914432 304.11.1.13 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › DUF4708 0.69 33.0 3.20e-01 77.1% 40.6%
4632150 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.68 30.0 3.92e-01 77.1% 71.6%
5030867 304.160.1.1 ↗ a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › GvpL_GvpF 0.68 36.0 4.42e-01 88.0% 80.0%
4073171 304.120.1.11 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › UreE_C 0.68 30.0 3.90e-01 77.1% 71.6%
4246202 304.56.1.6 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › UreE_C 0.68 30.0 3.89e-01 77.1% 71.6%
3617015 304.120.1.12 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF26955 0.66 33.0 4.42e-01 77.1% 91.8%
3509233 304.120.1.12 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF26955 0.66 33.0 4.52e-01 77.1% 97.5%
4940473 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.63 33.0 4.22e-01 77.1% 88.9%
2672738 304.110.1.2 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › BLUF 0.62 31.0 3.31e-01 88.0% 50.3%
3365648 304.20.1.0 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.61 37.0 4.37e-01 77.1% 87.8%
4633863 304.28.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.59 37.0 4.28e-01 83.1% 87.8%
3495236 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.59 32.0 4.27e-01 71.1% 97.8%
4209732 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.59 32.0 4.10e-01 77.1% 92.6%
4233442 304.4.1.54 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.58 35.0 4.06e-01 87.3% 82.5%
3873915 219.1.1.81 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY-3_4_CD 0.55 45.0 3.56e-01 87.3% 82.3%
3417226 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 34.0 3.96e-01 78.3% 98.2%