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MH444512.1__AXF39324.1__X__00038

Bact-Vir

MH444512.1__AXF39324.1__X__00038

Identity

Accession:
MH444512 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-75
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.72 54.0 4.06e-01 93.8% 33.5%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 51.0 4.96e-01 84.6% 70.3%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.69 50.0 4.97e-01 80.0% 74.6%
1rtqA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.69 56.0 3.64e-01 89.2% 85.6%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.67 46.0 3.83e-01 70.8% 42.5%
4dmzA02 3.30.70.2880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 51.0 4.05e-01 89.2% 40.1%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 48.0 4.49e-01 90.8% 61.2%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.66 49.0 3.91e-01 87.7% 38.7%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 48.0 4.36e-01 80.0% 59.8%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.66 47.0 4.42e-01 87.7% 62.5%
5llwA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.65 55.0 4.34e-01 100.0% 44.5%
1j3mA00 3.30.310.70 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain 0.65 51.0 4.21e-01 89.2% 92.9%
2qmaA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 46.0 3.85e-01 89.2% 41.6%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 45.0 4.37e-01 87.7% 66.7%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 45.0 4.38e-01 87.7% 67.6%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.63 46.0 3.71e-01 89.2% 38.8%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.62 45.0 4.00e-01 80.0% 80.2%
3cxjA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 50.0 3.90e-01 89.2% 49.3%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.61 47.0 4.34e-01 96.9% 63.3%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 4.07e-01 80.0% 60.0%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 45.0 4.20e-01 89.2% 64.3%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.60 45.0 3.89e-01 83.1% 52.8%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.19e-01 80.0% 74.2%
1vdxA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.59 47.0 3.54e-01 92.3% 76.1%
2x8xX01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.59 42.0 4.07e-01 76.9% 96.1%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 41.0 4.15e-01 73.8% 80.0%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.58 44.0 3.87e-01 83.1% 89.0%
2dgxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 45.0 4.27e-01 87.7% 72.5%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.57 43.0 4.04e-01 89.2% 63.5%
2itmB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 39.0 2.69e-01 72.3% 41.0%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.56 38.0 3.18e-01 70.8% 90.9%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.55 37.0 2.79e-01 70.8% 40.7%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 39.0 3.84e-01 80.0% 77.3%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.54 30.0 3.12e-01 98.5% 55.0%
1wjwA01 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.54 43.0 4.06e-01 92.3% 76.5%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.22e-01 96.9% 75.0%
3pf7B00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.53 44.0 2.69e-01 95.4% 44.5%
4rpoA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 38.0 3.19e-01 76.9% 79.7%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.53 39.0 3.15e-01 80.0% 74.6%
1ez0A02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.53 41.0 3.04e-01 87.7% 51.4%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 3.12e-01 96.9% 75.0%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.59e-01 76.9% 73.3%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 39.0 2.92e-01 87.7% 66.5%
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.51 43.0 3.57e-01 98.5% 76.2%
1f6bB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.62e-01 72.3% 53.3%
1eluA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 42.0 3.62e-01 100.0% 80.9%
1utbB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 39.0 3.23e-01 87.7% 75.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033171 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.77 57.0 5.49e-01 89.2% 69.3%
4134039 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.75 56.0 5.34e-01 87.7% 69.3%
4980798 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.70 53.0 5.10e-01 95.4% 70.7%
5051073 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.70 49.0 4.76e-01 90.8% 65.3%
4978228 305.2.1.0 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 0.70 52.0 5.22e-01 87.7% 80.0%
4791706 304.126.1.4 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N 0.69 51.0 4.97e-01 80.0% 70.3%
4987052 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 55.0 5.31e-01 89.2% 78.7%
4779977 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 51.0 4.71e-01 89.2% 62.4%
4536686 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.68 53.0 5.03e-01 95.4% 71.2%
5042071 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.68 55.0 5.04e-01 89.2% 71.8%
3329735 327.11.2.37 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DEAH11_1st 0.67 51.0 5.07e-01 93.8% 78.6%
4991070 304.8.1.43 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_5 0.67 50.0 4.92e-01 89.2% 75.7%
4385553 304.48.1.48 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.67 54.0 4.04e-01 89.2% 35.8%
5024285 3501.1.1.2 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 0.66 50.0 5.04e-01 89.2% 83.1%
1823111 304.126.1.4 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N 0.66 48.0 4.32e-01 80.0% 55.4%
4112187 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.66 46.0 4.53e-01 89.2% 68.6%
3603400 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.66 52.0 5.06e-01 95.4% 77.3%
4273759 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.66 49.0 4.38e-01 89.2% 54.5%
3489670 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.66 57.0 3.94e-01 100.0% 28.7%
3596282 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.66 52.0 4.69e-01 95.4% 62.1%
3165390 304.24.1.36 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SPOR 0.66 48.0 4.53e-01 80.0% 65.0%
4217761 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.65 48.0 4.61e-01 87.7% 68.4%
4817370 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.64 45.0 3.47e-01 83.1% 30.6%
3289410 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.64 52.0 3.41e-01 100.0% 19.4%
4999682 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.64 43.0 4.20e-01 89.2% 61.3%
5044181 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.64 48.0 4.60e-01 89.2% 70.7%
3956508 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.64 49.0 4.63e-01 87.7% 70.0%
4212253 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.64 46.0 4.16e-01 84.6% 54.8%
3168821 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.63 53.0 3.49e-01 100.0% 35.9%
4983053 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.63 50.0 4.65e-01 90.8% 70.6%
3289385 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.63 44.0 4.80e-01 83.1% 100.0%
5068502 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.61 42.0 3.95e-01 73.8% 57.6%
3746049 3914.1.1.1 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin 0.61 48.0 2.75e-01 89.2% 11.9%
4198624 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.61 53.0 3.51e-01 100.0% 33.2%
4448399 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.59 50.0 3.36e-01 100.0% 46.4%
3987356 3067.1.1.1 few secondary structure elements › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › DnaI_N 0.58 42.0 3.87e-01 76.9% 67.1%
5038034 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.58 48.0 4.41e-01 95.4% 77.8%
5065478 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.58 45.0 4.23e-01 92.3% 69.3%
3521725 327.11.2.55 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF26774 0.58 44.0 4.16e-01 87.7% 69.4%
1122448 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.57 44.0 3.84e-01 89.2% 54.1%
3208120 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.56 47.0 3.67e-01 98.5% 83.9%
4525118 205.1.1.80 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_7, Fer4_9 0.54 38.0 3.08e-01 73.8% 36.9%
3724441 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 44.0 4.46e-01 96.9% 95.4%
3880784 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 41.0 3.80e-01 89.2% 64.5%
4402684 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.54 44.0 3.26e-01 100.0% 77.1%
3935332 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 33.0 2.75e-01 86.2% 30.8%
5052204 205.1.1.0 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.53 40.0 3.79e-01 87.7% 65.9%
3519344 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 44.0 2.90e-01 100.0% 90.6%
3659885 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 42.0 3.87e-01 98.5% 78.9%
4149109 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 38.0 3.51e-01 78.5% 67.1%
3549652 109.26.1.1 alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C 0.52 37.0 2.11e-01 76.9% 16.1%
5031362 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 35.0 3.61e-01 70.8% 88.3%
4483775 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.51 41.0 3.04e-01 98.5% 75.2%
3275078 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.50 42.0 3.05e-01 100.0% 65.5%