Back to structures

MH445500.1__AWY02825.1__X__00028

Bact-Vir

MH445500.1__AWY02825.1__X__00028

Identity

Accession:
MH445500 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-63
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7v5yA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.80 63.0 6.05e-01 100.0% 76.5%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.68 58.0 4.56e-01 100.0% 47.9%
4ftfA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.67 57.0 4.33e-01 100.0% 56.0%
3lulA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.67 49.0 3.33e-01 79.1% 22.6%
1a79A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.67 55.0 4.33e-01 100.0% 46.0%
6d6zA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.66 57.0 3.57e-01 100.0% 36.8%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.66 55.0 4.43e-01 100.0% 50.5%
2yjgA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.65 55.0 3.47e-01 100.0% 37.3%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 54.0 3.80e-01 100.0% 30.3%
1wtjA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.64 54.0 3.57e-01 100.0% 77.0%
1q0sA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 53.0 3.74e-01 100.0% 50.0%
2qvxX02 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 46.0 3.39e-01 100.0% 27.9%
1odfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 52.0 3.19e-01 100.0% 29.3%
2yzsA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.61 49.0 4.13e-01 100.0% 51.2%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.60 45.0 3.99e-01 88.4% 85.9%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.60 44.0 3.83e-01 100.0% 46.3%
3ocoA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 50.0 3.52e-01 100.0% 30.1%
5iipA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 47.0 3.52e-01 100.0% 34.5%
2yzqA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 48.0 3.74e-01 100.0% 41.4%
2b4lA01 3.40.190.100 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Glycine betaine-binding periplasmic protein; domain 2 0.58 47.0 3.64e-01 100.0% 76.6%
4dqwA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 48.0 3.57e-01 97.7% 36.3%
1vbiA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.58 45.0 2.99e-01 100.0% 78.9%
2nycA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 47.0 3.40e-01 100.0% 31.5%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 47.0 3.38e-01 100.0% 30.1%
2nwhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 48.0 2.92e-01 100.0% 32.2%
3qw4B02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 40.0 2.71e-01 79.1% 30.2%
3kzhB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 45.0 2.77e-01 100.0% 25.5%
3kh5A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 46.0 3.29e-01 100.0% 29.6%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 44.0 3.25e-01 100.0% 32.3%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.12e-01 93.0% 37.9%
3ddjA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 46.0 3.28e-01 100.0% 29.4%
7ahhC02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 39.0 3.20e-01 100.0% 36.2%
4jbcA01 3.30.70.1690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.51e-01 100.0% 72.2%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.54e-01 100.0% 58.3%
3ocmB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 43.0 3.08e-01 100.0% 28.1%
4wu3A02 3.30.70.1690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.57e-01 100.0% 85.9%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.53 39.0 3.23e-01 100.0% 37.7%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.18e-01 93.0% 37.3%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 41.0 3.36e-01 90.7% 56.5%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 44.0 2.52e-01 97.7% 8.6%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.53 40.0 3.34e-01 100.0% 56.0%
3mxqC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 45.0 3.19e-01 100.0% 32.8%
1u9yA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 2.88e-01 93.0% 27.3%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.20e-01 97.7% 49.1%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.50 42.0 4.18e-01 100.0% 87.0%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.50 39.0 3.50e-01 93.0% 56.3%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000875 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.72 60.0 4.87e-01 100.0% 51.1%
3961432 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.70 58.0 4.01e-01 100.0% 27.1%
5057784 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 57.0 4.55e-01 97.7% 54.7%
5078493 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.69 59.0 4.42e-01 100.0% 40.9%
4981147 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.68 57.0 3.91e-01 100.0% 35.2%
1171244 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.68 58.0 4.56e-01 100.0% 47.9%
4960637 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.68 59.0 4.68e-01 100.0% 65.6%
3171666 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.68 55.0 3.56e-01 100.0% 75.2%
4934312 7601.1.1.0 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain 0.68 58.0 3.72e-01 100.0% 32.1%
3244571 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.68 56.0 4.57e-01 100.0% 47.8%
4163961 7582.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD 0.67 59.0 4.27e-01 100.0% 43.3%
5058813 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.67 56.0 3.63e-01 100.0% 26.8%
5037264 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 51.0 4.13e-01 83.7% 60.0%
4971361 7592.1.1.3 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N 0.66 52.0 3.98e-01 100.0% 35.0%
4988165 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 52.0 3.64e-01 100.0% 25.1%
4980953 7601.1.1.1 a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.66 56.0 3.57e-01 100.0% 38.7%
1392754 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.64 54.0 4.30e-01 100.0% 48.4%
3175567 3541.1.1.1 beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG31 0.63 44.0 3.32e-01 100.0% 29.6%
4015084 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.63 46.0 3.15e-01 79.1% 80.0%
3385823 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 50.0 3.69e-01 90.7% 33.0%
5011673 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 55.0 4.03e-01 100.0% 70.4%
3919472 2006.1.6.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.62 49.0 3.38e-01 100.0% 30.6%
4169299 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 50.0 3.65e-01 88.4% 77.1%
3249181 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.62 48.0 4.04e-01 100.0% 51.1%
3386682 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.61 46.0 2.69e-01 83.7% 44.2%
4355799 223.1.1.26 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.60 46.0 3.21e-01 90.7% 23.6%
3971143 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.60 49.0 3.32e-01 100.0% 24.1%
5067350 7518.1.1.0 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.59 50.0 3.87e-01 100.0% 80.0%
3423636 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.59 43.0 3.57e-01 93.0% 40.0%
3818050 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.58 43.0 3.75e-01 93.0% 48.8%
3641260 282.1.1.0 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.58 46.0 3.40e-01 100.0% 31.1%
3717848 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.58 45.0 2.53e-01 100.0% 20.7%
3761389 10.32.1.20 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FBA 0.57 43.0 3.21e-01 88.4% 95.4%
4065547 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.57 47.0 2.91e-01 100.0% 29.8%
4159886 3541.1.1.1 beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG31 0.57 48.0 3.45e-01 100.0% 36.2%
3442291 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.57 43.0 2.43e-01 81.4% 41.5%
3993195 859.1.1.0 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.57 42.0 3.22e-01 90.7% 60.0%
4063889 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.57 47.0 3.58e-01 100.0% 58.4%
3809500 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.56 40.0 2.55e-01 76.7% 45.7%
4061262 3541.1.1.1 beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG31 0.56 48.0 3.44e-01 100.0% 32.1%
3625937 101.1.2.216 alpha arrays › HTH › HTH › winged helix domain › CED4_WHD 0.55 40.0 2.90e-01 83.7% 70.0%
3642410 282.1.1.0 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.55 46.0 3.21e-01 100.0% 27.3%
3588825 2004.1.1.552 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C 0.55 45.0 2.58e-01 95.3% 82.2%
4607431 11.1.1.1150 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › InlK_D3 0.55 41.0 3.17e-01 93.0% 33.6%
3318217 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.55 42.0 3.65e-01 93.0% 50.0%
4283253 327.11.1.14 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › PF27311 0.55 46.0 3.41e-01 100.0% 48.3%
3380863 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.54 41.0 2.33e-01 95.3% 17.7%
4067342 5069.1.1.15 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.54 37.0 2.26e-01 76.7% 32.4%
3822479 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 40.0 3.43e-01 95.3% 52.2%
3364928 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.53 41.0 2.51e-01 95.3% 34.4%
4873474 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.53 38.0 3.88e-01 83.7% 92.9%
None 0.53 41.0 2.69e-01 88.4% 51.6%
3674397 2485.1.1.82 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ATP-synt_10 0.52 41.0 3.28e-01 90.7% 80.0%
2154862 2498.1.1.23 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.52 38.0 2.12e-01 83.7% 17.8%
3249715 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.52 37.0 2.75e-01 79.1% 36.0%
4193894 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.52 44.0 2.57e-01 97.7% 31.7%
4005326 109.2.1.42 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › MGH1-like_GH 0.51 41.0 2.34e-01 93.0% 22.7%
3380073 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 38.0 2.34e-01 90.7% 30.6%
3312089 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.50 40.0 3.10e-01 90.7% 50.0%