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MH450123.1__AXH44387.1__SEA_MARGARETKALI_4__00004
Bact-VirMH450123.1__AXH44387.1__SEA_MARGARETKALI_4__00004
Identity
- Accession:
- MH450123 ↗
- Kingdom:
- phage
Quality
96.1
mean pLDDT
Taxonomy
TaxID: 2250414
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-51
Domain cluster:
rep: NC_016569.1__YP_004957639.1__X__00004__D36-93
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.91 | 77.0 | 6.69e-01 | 100.0% | 63.4% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.90 | 84.0 | 7.45e-01 | 100.0% | 73.5% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.88 | 80.0 | 6.92e-01 | 100.0% | 68.0% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.87 | 79.0 | 6.91e-01 | 100.0% | 68.5% |
| 3jb9H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.86 | 78.0 | 6.68e-01 | 100.0% | 68.4% |
| 4c92F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.86 | 77.0 | 6.62e-01 | 100.0% | 70.1% |
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.85 | 77.0 | 7.25e-01 | 100.0% | 85.0% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.84 | 76.0 | 6.70e-01 | 100.0% | 70.4% |
| 3jb9F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 74.0 | 6.23e-01 | 100.0% | 61.0% |
| 1nh2D02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.77 | 61.0 | 6.27e-01 | 88.0% | 97.9% |
| 3by7E00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 67.0 | 5.89e-01 | 100.0% | 73.7% |
| 1nvpD02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.76 | 61.0 | 6.29e-01 | 88.0% | 100.0% |
| 1nh2C00 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.68 | 52.0 | 5.27e-01 | 86.0% | 90.0% |
| 2xgjA05 | 2.40.30.300 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.63 | 51.0 | 3.98e-01 | 100.0% | 67.7% |
| 4jpqA00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 45.0 | 2.99e-01 | 80.0% | 53.0% |
| 2pa4A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.60 | 47.0 | 3.00e-01 | 92.0% | 32.0% |
| 3kkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 47.0 | 3.55e-01 | 96.0% | 61.1% |
| 7wsoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 41.0 | 3.47e-01 | 76.0% | 74.1% |
| 1fy2A00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.57 | 42.0 | 2.87e-01 | 86.0% | 30.9% |
| 2m9uA00 | 2.30.30.850 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 45.0 | 3.75e-01 | 100.0% | 49.4% |
| 3jukA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 45.0 | 2.94e-01 | 94.0% | 35.5% |
| 7c5yA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 3.21e-01 | 94.0% | 92.8% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 44.0 | 3.27e-01 | 92.0% | 40.5% |
| 3f40A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 43.0 | 3.52e-01 | 94.0% | 74.8% |
| 6k96B02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 38.0 | 3.17e-01 | 74.0% | 76.3% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 41.0 | 3.98e-01 | 80.0% | 76.8% |
| 5lf5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 39.0 | 3.07e-01 | 76.0% | 69.8% |
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.55 | 42.0 | 3.02e-01 | 84.0% | 79.5% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 48.0 | 3.49e-01 | 100.0% | 68.5% |
| 5tjjB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 41.0 | 2.92e-01 | 86.0% | 25.8% |
| 1sjwA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 43.0 | 3.29e-01 | 96.0% | 63.4% |
| 2v1oB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 43.0 | 3.05e-01 | 86.0% | 58.8% |
| 3robA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 43.0 | 3.29e-01 | 94.0% | 80.2% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.53 | 37.0 | 3.30e-01 | 84.0% | 48.8% |
| 2fivA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.53 | 39.0 | 3.27e-01 | 92.0% | 77.0% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.53 | 39.0 | 3.72e-01 | 80.0% | 71.2% |
| 2e1qC05 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.52 | 42.0 | 3.34e-01 | 96.0% | 90.7% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.12e-01 | 94.0% | 83.6% |
| 3s5tA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.52 | 43.0 | 3.11e-01 | 96.0% | 68.6% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.13e-01 | 94.0% | 83.5% |
| 4lgqA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 3.17e-01 | 96.0% | 81.2% |
| 2pn5A06 | 2.20.130.20 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › | 0.51 | 35.0 | 2.96e-01 | 74.0% | 66.0% |
| 4ix3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 39.0 | 3.18e-01 | 96.0% | 83.2% |
| 2r76A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.50 | 38.0 | 2.92e-01 | 86.0% | 86.4% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602785 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.97 | 81.0 | 7.53e-01 | 100.0% | 73.3% |
| 3172870 | 4.1.1.67 ↗ | beta barrels › SH3 › SH3 › SH3 › FDF | 0.90 | 75.0 | 5.94e-01 | 100.0% | 47.4% |
| 5069300 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.90 | 83.0 | 6.32e-01 | 100.0% | 77.1% |
| 3621457 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.90 | 82.0 | 7.27e-01 | 100.0% | 72.9% |
| 3712189 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.89 | 82.0 | 6.59e-01 | 100.0% | 63.3% |
| 3783301 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.89 | 78.0 | 5.93e-01 | 100.0% | 44.8% |
| 4024727 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.88 | 81.0 | 6.21e-01 | 100.0% | 49.0% |
| 4015654 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.88 | 80.0 | 7.08e-01 | 100.0% | 71.4% |
| 5060199 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.88 | 81.0 | 6.16e-01 | 100.0% | 76.2% |
| 3712963 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.87 | 79.0 | 6.33e-01 | 100.0% | 54.3% |
| 3832288 | 4.1.1.81 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM14 | 0.87 | 78.0 | 6.37e-01 | 100.0% | 70.0% |
| 5081091 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.87 | 79.0 | 6.29e-01 | 100.0% | 75.8% |
| 3595291 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.87 | 79.0 | 6.40e-01 | 100.0% | 56.7% |
| 3518029 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.87 | 78.0 | 6.15e-01 | 100.0% | 51.0% |
| 4884271 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.87 | 78.0 | 6.88e-01 | 100.0% | 69.4% |
| 5075579 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 77.0 | 6.55e-01 | 100.0% | 62.5% |
| 1175040 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.85 | 77.0 | 7.25e-01 | 100.0% | 85.0% |
| 3606838 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 76.0 | 6.08e-01 | 100.0% | 52.6% |
| 4990442 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.83 | 75.0 | 6.37e-01 | 100.0% | 63.7% |
| 4876572 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.83 | 74.0 | 6.09e-01 | 100.0% | 56.8% |
| 5038431 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 75.0 | 6.60e-01 | 100.0% | 70.0% |
| 4010995 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 74.0 | 6.39e-01 | 100.0% | 77.3% |
| 409204 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.80 | 71.0 | 5.61e-01 | 100.0% | 49.5% |
| 4642909 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.74 | 61.0 | 4.64e-01 | 94.0% | 41.7% |
| 4184026 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.71 | 60.0 | 4.07e-01 | 94.0% | 32.2% |
| 3995211 | 74.1.1.2 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA | 0.64 | 52.0 | 5.18e-01 | 94.0% | 90.7% |
| 3937325 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.59 | 44.0 | 3.14e-01 | 84.0% | 82.1% |
| 3971018 | 4166.1.1.1 ↗ | beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › T6SS_VasE | 0.59 | 44.0 | 3.23e-01 | 88.0% | 63.6% |
| 3508298 | 5.1.3.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 | 0.58 | 45.0 | 2.84e-01 | 98.0% | 95.0% |
| 5030199 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.56 | 48.0 | 3.01e-01 | 100.0% | 51.8% |
| 4011824 | 5.1.3.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 | 0.56 | 43.0 | 2.70e-01 | 98.0% | 93.7% |
| 5072932 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.55 | 44.0 | 4.30e-01 | 100.0% | 93.3% |
| 3494790 | 223.1.1.115 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30396 | 0.55 | 41.0 | 3.27e-01 | 92.0% | 55.4% |
| 4952885 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.54 | 44.0 | 3.60e-01 | 92.0% | 89.5% |
| 3584922 | 5.1.4.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 | 0.52 | 43.0 | 2.77e-01 | 94.0% | 53.6% |
| 4978676 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.52 | 40.0 | 3.57e-01 | 88.0% | 56.2% |
| 3363098 | 295.1.1.5 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly | 0.52 | 40.0 | 3.16e-01 | 84.0% | 61.0% |
| 3488611 | 383.1.2.0 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Laterosporulin | 0.52 | 36.0 | 3.96e-01 | 74.0% | 95.0% |
| 3684352 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.52 | 37.0 | 2.55e-01 | 80.0% | 43.9% |
| 3600380 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 38.0 | 2.39e-01 | 94.0% | 17.2% |
| 3968646 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.51 | 39.0 | 3.07e-01 | 94.0% | 83.8% |
| 3595983 | 3186.1.1.0 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK | 0.50 | 34.0 | 2.97e-01 | 72.0% | 43.4% |