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MH450123.1__AXH44424.1__SEA_MARGARETKALI_44__00044

Bact-Vir

MH450123.1__AXH44424.1__SEA_MARGARETKALI_44__00044

Identity

Accession:
MH450123 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kumottavirus› Arthrobacter_phage_MargaretKali

TaxID: 2250414

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-84
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.78 57.0 5.23e-01 86.3% 60.9%
1ikpA02 3.90.1350.10 Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain 0.70 50.0 3.53e-01 76.5% 64.6%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.66 46.0 4.02e-01 84.3% 46.9%
1np7A02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 51.0 3.96e-01 90.2% 88.2%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 52.0 4.64e-01 90.2% 64.8%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.63 49.0 4.20e-01 100.0% 51.7%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.61 54.0 4.81e-01 98.0% 80.3%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 48.0 3.50e-01 90.2% 44.2%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.58 50.0 4.82e-01 94.1% 87.7%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 46.0 4.41e-01 84.3% 94.7%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 49.0 4.16e-01 94.1% 96.4%
1vsy300 1.10.287.2210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 44.0 3.81e-01 82.4% 96.1%
2b1eA03 1.10.357.60 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.55 48.0 3.38e-01 100.0% 73.8%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 38.0 3.30e-01 72.5% 50.0%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.57e-01 84.3% 48.8%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.54 45.0 4.24e-01 98.0% 78.5%
1xatA00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.52 35.0 2.39e-01 72.5% 18.8%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 36.0 3.64e-01 72.5% 86.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4266981 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.71 51.0 4.15e-01 84.3% 40.0%
3270040 101.1.16.0 ↗ alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain 0.68 50.0 4.39e-01 96.1% 52.5%
4316691 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 43.0 4.15e-01 86.3% 55.0%
3331967 397.7.1.3 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › DUF842 0.67 47.0 4.77e-01 98.0% 76.0%
3925986 108.1.1.36 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_14 0.66 46.0 4.10e-01 78.4% 50.7%
60308 192.3.1.0 ↗ alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain 0.66 44.0 3.83e-01 70.6% 98.8%
4520394 5063.1.1.1 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.64 55.0 5.04e-01 98.0% 72.5%
3806070 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.60 37.0 3.74e-01 88.2% 60.0%
3387877 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.58 46.0 4.12e-01 100.0% 62.9%
3510298 605.1.1.140 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HIG_1_N 0.57 41.0 3.65e-01 78.4% 66.7%
4431704 152.1.2.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.56 45.0 4.13e-01 92.2% 71.4%
3987595 5042.1.1.1 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.56 45.0 4.24e-01 96.1% 71.9%
3966077 101.26.1.1 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.55 45.0 4.11e-01 94.1% 100.0%
3175276 212.1.1.34 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFL1 0.55 47.0 3.06e-01 96.1% 89.1%
3234919 2006.1.4.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.53 46.0 3.15e-01 100.0% 71.1%