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MH450125.1__AXH44618.1__SEA_MEDIUMFRY_74__00074

Bact-Vir

MH450125.1__AXH44618.1__SEA_MEDIUMFRY_74__00074

Identity

Accession:
MH450125 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-68
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.86 74.0 6.19e-01 100.0% 57.5%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 46.0 4.78e-01 97.0% 70.5%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 42.0 4.33e-01 98.5% 79.7%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.60 52.0 4.54e-01 95.5% 74.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.54e-01 81.8% 91.9%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 49.0 4.07e-01 98.5% 97.5%
3zi1A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 44.0 3.51e-01 89.4% 71.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.14e-01 100.0% 76.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.35e-01 100.0% 88.7%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 3.67e-01 78.8% 63.5%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 46.0 4.45e-01 98.5% 96.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.00e-01 100.0% 75.0%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 37.0 3.11e-01 74.2% 41.0%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 37.0 3.26e-01 77.3% 85.8%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.52 44.0 4.11e-01 97.0% 100.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.52 43.0 4.39e-01 100.0% 95.2%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.94e-01 95.5% 95.9%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.62e-01 89.4% 62.9%
1ep5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 38.0 3.50e-01 80.3% 90.7%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 35.0 2.04e-01 71.2% 9.4%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.50 40.0 3.00e-01 87.9% 100.0%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 2.54e-01 100.0% 19.0%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.50 40.0 3.58e-01 90.9% 65.7%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 42.0 3.59e-01 95.5% 62.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3790904 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.76 46.0 4.84e-01 93.9% 66.7%
2464247 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.68 44.0 4.46e-01 97.0% 65.2%
4857803 2.1.1.40 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNAP_B_exo_N 0.63 35.0 4.21e-01 81.8% 94.6%
4014812 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.63 42.0 4.36e-01 95.5% 75.0%
3703749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.70e-01 100.0% 80.0%
3368743 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 43.0 4.51e-01 93.9% 81.7%
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.47e-01 80.3% 84.3%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.61e-01 100.0% 87.7%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 44.0 3.77e-01 98.5% 50.0%
4493573 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.58 48.0 3.54e-01 97.0% 46.5%
2674741 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.57 40.0 4.28e-01 75.8% 100.0%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.59e-01 98.5% 96.4%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.59e-01 98.5% 96.4%
4300449 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.56 43.0 4.37e-01 100.0% 83.1%
3661102 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 38.0 4.03e-01 71.2% 83.6%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.26e-01 97.0% 85.0%
3189510 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 38.0 3.99e-01 89.4% 80.0%
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.55 43.0 4.41e-01 98.5% 85.9%
3501287 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 32.0 3.74e-01 77.3% 92.5%
4024732 295.1.1.40 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Microp_apicomplexa_10 0.55 39.0 3.75e-01 75.8% 63.7%
4929550 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.55 43.0 4.29e-01 98.5% 82.9%
4605602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.20e-01 100.0% 81.5%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 43.0 4.45e-01 97.0% 88.9%
2675820 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.55 41.0 3.70e-01 100.0% 58.2%
3660964 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.54 43.0 3.76e-01 100.0% 56.0%
3228184 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.54 42.0 3.47e-01 87.9% 45.6%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.54 42.0 4.31e-01 100.0% 89.2%
5002178 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.53 33.0 3.63e-01 86.4% 80.0%
5073368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 43.0 4.23e-01 100.0% 82.9%
4891173 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.53 44.0 3.03e-01 97.0% 89.6%
3517323 3131.1.1.2 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.53 37.0 3.21e-01 75.8% 53.6%
3231216 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.97e-01 71.2% 100.0%
3232550 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 41.0 3.84e-01 89.4% 90.6%
3234465 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 44.0 3.50e-01 100.0% 79.2%
D2 high residues 93-157
PDB
D3 high residues 180-236
PDB
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.89 82.0 6.55e-01 100.0% 55.7%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 53.0 3.75e-01 100.0% 45.9%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 32.0 3.71e-01 71.9% 74.3%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.59 44.0 4.47e-01 82.5% 100.0%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 42.0 3.08e-01 78.9% 53.8%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.57 49.0 3.60e-01 98.2% 48.8%
4l8jA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.57 44.0 3.68e-01 82.5% 51.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.24e-01 100.0% 73.8%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.57 39.0 4.06e-01 93.0% 82.4%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 4.16e-01 100.0% 95.2%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 40.0 3.36e-01 77.2% 65.7%
3vppB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 42.0 3.40e-01 86.0% 79.5%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 42.0 3.14e-01 84.2% 80.5%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.54 44.0 3.18e-01 98.2% 76.7%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 41.0 3.27e-01 86.0% 88.5%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.53 41.0 3.83e-01 91.2% 90.9%
1ufvA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.53 40.0 3.47e-01 87.7% 98.0%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.53 41.0 3.81e-01 89.5% 97.4%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.09e-01 84.2% 75.7%
3mxtA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.53 39.0 3.41e-01 86.0% 96.0%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 40.0 4.04e-01 93.0% 85.7%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.17e-01 94.7% 87.7%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 42.0 2.74e-01 98.2% 69.1%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.52 39.0 3.19e-01 84.2% 76.7%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 38.0 2.54e-01 89.5% 92.1%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.90e-01 94.7% 95.6%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 42.0 3.61e-01 96.5% 86.9%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 3.05e-01 89.5% 45.7%
2x3fA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.51 38.0 3.30e-01 86.0% 96.0%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.50 35.0 3.11e-01 75.4% 83.7%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 42.0 3.94e-01 96.5% 91.9%
1y56A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 43.0 2.91e-01 96.5% 73.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 41.0 4.04e-01 98.2% 85.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4010681 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 51.0 4.32e-01 80.7% 64.2%
4231842 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.66 49.0 4.41e-01 78.9% 87.5%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.11e-01 94.7% 60.0%
3692769 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.62 53.0 3.61e-01 100.0% 36.5%
5052666 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.60 43.0 3.73e-01 77.2% 68.1%
4029093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 44.0 3.25e-01 78.9% 35.5%
4368436 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.60 44.0 2.86e-01 80.7% 29.8%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 41.0 3.97e-01 73.7% 70.8%
3405538 219.1.1.111 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.58 47.0 3.05e-01 94.7% 53.2%
3508531 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.57 39.0 4.05e-01 98.2% 82.0%
4992039 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.56 41.0 3.75e-01 96.5% 59.5%
4963287 375.1.1.334 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_0758 0.55 42.0 4.27e-01 84.2% 89.1%
4887360 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 35.0 3.53e-01 94.7% 63.3%
3784839 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 40.0 3.48e-01 86.0% 59.0%
4952060 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 40.0 3.98e-01 91.2% 78.3%
3984091 3180.1.1.1 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.53 43.0 3.62e-01 93.0% 84.8%
5001101 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.53 36.0 3.64e-01 73.7% 70.0%
3789432 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 40.0 2.44e-01 89.5% 25.7%
3303112 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 43.0 3.55e-01 94.7% 65.5%
4411008 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 40.0 3.06e-01 89.5% 99.4%
4963741 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 40.0 3.17e-01 98.2% 40.0%
5059701 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.51 43.0 2.73e-01 94.7% 26.8%
3576662 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.60e-01 89.5% 24.7%
1265583 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.51 41.0 3.19e-01 98.2% 40.2%
3656431 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.51 36.0 2.20e-01 78.9% 12.4%
3707878 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.51 42.0 2.74e-01 94.7% 31.4%