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MH458951.1__AXF39850.1__BMBphi_gp002__00002

Bact-Vir

MH458951.1__AXF39850.1__BMBphi_gp002__00002

Identity

Accession:
MH458951 ↗
Kingdom:
phage

Quality

67.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_vB_BthS_BMBphi

TaxID: 2498843

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-79
PDB
Domain cluster: rep: gwa1_scaffold_1_prodigal-single.1__X__X__00024__D75-147
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 38.0 3.37e-01 88.9% 35.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 4.86e-01 90.3% 75.8%
5ejrA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.69 39.0 3.74e-01 83.3% 46.5%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.46e-01 81.9% 71.2%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 4.85e-01 83.3% 95.8%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 40.0 4.61e-01 79.2% 91.8%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.60 48.0 3.53e-01 87.5% 96.9%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 42.0 4.17e-01 94.4% 69.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.20e-01 84.7% 67.5%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 3.78e-01 86.1% 60.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.20e-01 88.9% 67.4%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 38.0 3.43e-01 88.9% 49.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 41.0 3.76e-01 87.5% 57.3%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 35.0 3.19e-01 90.3% 45.4%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 4.00e-01 90.3% 78.1%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.38e-01 83.3% 82.2%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 37.0 3.67e-01 81.9% 64.1%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 43.0 3.47e-01 94.4% 43.4%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 39.0 3.38e-01 87.5% 47.7%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.55 43.0 3.64e-01 94.4% 51.3%
1cttA02 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 43.0 3.71e-01 95.8% 53.0%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 43.0 3.52e-01 90.3% 47.2%
4yn3A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.54 41.0 3.39e-01 83.3% 96.3%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 40.0 3.23e-01 97.2% 39.9%
2pw9C02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 35.0 3.74e-01 88.9% 84.5%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 36.0 3.10e-01 98.6% 45.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 39.0 3.09e-01 94.4% 36.5%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 40.0 3.45e-01 87.5% 54.1%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.51 41.0 3.30e-01 88.9% 89.0%
6jifA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.51 34.0 2.68e-01 70.8% 73.2%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 41.0 3.28e-01 90.3% 44.4%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 3.16e-01 90.3% 70.3%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.51 40.0 2.83e-01 97.2% 26.7%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 39.0 3.48e-01 87.5% 58.7%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 3.68e-01 100.0% 73.7%
4ofyD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.17e-01 72.2% 97.1%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.57e-01 98.6% 91.2%
4bq2D01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.50 43.0 3.20e-01 95.8% 48.1%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607227 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.72 47.0 5.48e-01 80.6% 96.0%
4632256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 55.0 5.50e-01 83.3% 94.7%
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.70 57.0 5.92e-01 88.9% 100.0%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.67 39.0 4.59e-01 88.9% 91.1%
4163851 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 42.0 4.49e-01 80.6% 76.7%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 39.0 4.69e-01 79.2% 97.8%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.63 47.0 4.57e-01 100.0% 71.2%
3813787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.13e-01 83.3% 97.4%
3447802 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.60 39.0 3.66e-01 84.7% 53.3%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 40.0 3.28e-01 87.5% 37.7%
3883725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.11e-01 87.5% 97.4%
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.60 43.0 4.40e-01 83.3% 78.6%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.59 39.0 4.42e-01 93.1% 96.0%
3958896 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.59 37.0 3.96e-01 81.9% 75.0%
3508990 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.58 44.0 4.64e-01 88.9% 93.8%
2132422 10.1.1.14 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CoV_S1 0.57 49.0 3.42e-01 95.8% 40.4%
3378819 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.56 43.0 3.47e-01 83.3% 96.6%
3939200 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 45.0 3.77e-01 88.9% 90.8%
3786396 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.56 47.0 3.84e-01 94.4% 50.0%
3770713 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.56 40.0 3.90e-01 76.4% 90.0%
3804891 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.55 42.0 3.52e-01 83.3% 100.0%
3426874 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.55 44.0 3.62e-01 87.5% 97.8%
3510040 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.55 42.0 4.10e-01 93.1% 75.0%
3325330 3346.1.1.5 ↗ a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.55 35.0 2.59e-01 80.6% 24.1%
3304815 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.55 42.0 3.44e-01 84.7% 99.3%
3366242 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.55 42.0 3.40e-01 83.3% 100.0%
3420298 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.55 43.0 3.52e-01 88.9% 97.9%
3421509 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.54 43.0 3.52e-01 87.5% 98.6%
3383282 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.54 43.0 3.43e-01 87.5% 98.0%
4954871 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 42.0 3.68e-01 87.5% 98.3%
3808886 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.54 41.0 3.53e-01 84.7% 98.4%
3688820 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.53 45.0 2.97e-01 97.2% 54.9%
5052496 1.1.5.36 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.51 41.0 3.22e-01 87.5% 49.0%
4181066 240.2.1.0 ↗ a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit 0.51 39.0 3.50e-01 87.5% 96.4%
332272 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.51 41.0 3.28e-01 90.3% 44.4%
4271892 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 41.0 3.40e-01 87.5% 51.2%
5036976 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.48e-01 90.3% 53.3%
4207197 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 39.0 3.52e-01 84.7% 61.0%
3267853 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.50 32.0 2.37e-01 93.1% 20.5%
4978421 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.50 41.0 3.57e-01 94.4% 99.2%