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MH458951.1__AXF39855.1__BMBphi_gp007__00007

Bact-Vir

MH458951.1__AXF39855.1__BMBphi_gp007__00007

Identity

Accession:
MH458951 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_vB_BthS_BMBphi

TaxID: 2498843

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-63
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jxkA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.59 44.0 3.29e-01 83.1% 30.2%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 52.0 3.46e-01 100.0% 58.1%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 39.0 3.04e-01 71.2% 40.9%
1sz2A02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.58 44.0 3.17e-01 86.4% 86.0%
3r1kA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 49.0 4.25e-01 100.0% 77.1%
4l8jA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.57 41.0 3.53e-01 78.0% 79.6%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 48.0 3.08e-01 100.0% 89.8%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.56e-01 100.0% 52.1%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 3.01e-01 89.8% 97.4%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.54 38.0 3.99e-01 93.2% 81.5%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 35.0 2.73e-01 71.2% 66.2%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.53 41.0 3.54e-01 91.5% 87.5%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 34.0 3.43e-01 71.2% 66.1%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 36.0 2.80e-01 74.6% 66.0%
1v73A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 44.0 2.77e-01 96.6% 50.8%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 2.91e-01 76.3% 52.4%
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.58e-01 93.2% 93.8%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 35.0 2.48e-01 72.9% 23.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588583 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 42.0 3.20e-01 72.9% 78.6%
4124004 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 40.0 3.96e-01 74.6% 66.2%
3217638 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 41.0 3.83e-01 74.6% 98.7%
3483766 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 40.0 3.38e-01 72.9% 69.0%
4403166 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 40.0 3.93e-01 76.3% 67.7%
4203580 2484.1.1.31 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase 0.57 44.0 3.18e-01 86.4% 93.0%
3738905 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.57 47.0 3.97e-01 94.9% 53.0%
3241311 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 40.0 2.82e-01 74.6% 53.2%
4971881 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.54 46.0 3.84e-01 96.6% 71.3%
2488400 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.54 41.0 3.42e-01 84.7% 90.7%
3219961 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 38.0 3.01e-01 76.3% 63.0%
3642022 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.53 36.0 3.14e-01 72.9% 58.0%
3661480 5.1.4.224 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.52 44.0 2.77e-01 96.6% 87.8%
3507995 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.52 36.0 2.46e-01 71.2% 41.4%
3707684 243.11.1.0 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein 0.52 38.0 3.68e-01 94.9% 69.2%
4514389 2484.1.1.31 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase 0.52 42.0 3.05e-01 98.3% 92.2%
3717304 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 46.0 2.88e-01 100.0% 32.9%
3588182 9.16.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.51 35.0 2.94e-01 71.2% 69.5%
4931231 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 44.0 3.03e-01 94.9% 69.5%
3422058 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.51 46.0 2.98e-01 100.0% 35.0%
3890372 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 45.0 3.63e-01 96.6% 65.5%
4939786 2484.2.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.51 42.0 3.85e-01 93.2% 86.3%
4972687 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.51 44.0 3.65e-01 100.0% 72.7%
5068438 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 36.0 2.86e-01 89.8% 34.6%
3280865 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.51 41.0 2.68e-01 94.9% 97.0%
3498477 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 42.0 2.62e-01 96.6% 79.1%
5041316 5.1.4.664 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_2 0.50 43.0 2.65e-01 100.0% 18.2%
4890150 5.1.4.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APH-like_N 0.50 41.0 2.68e-01 98.3% 89.2%