←Back to structures

MH460463.1__AXG67075.1__AD1_031__00031

Bact-Vir

MH460463.1__AXG67075.1__AD1_031__00031

Identity

Accession:
MH460463 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alexandravirus› Dickeya_phage_vB_DsoM_AD1

TaxID: 2283029

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-111
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dmxB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 43.0 3.82e-01 92.6% 50.6%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.56 30.0 3.88e-01 84.3% 100.0%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.55e-01 72.2% 89.6%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 22.0 3.24e-01 79.6% 87.5%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 34.0 3.85e-01 87.0% 89.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4408024 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.61 29.0 3.79e-01 100.0% 81.7%
3810129 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.54 28.0 3.42e-01 89.8% 80.0%
4380871 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.52 42.0 3.16e-01 90.7% 63.7%
3508716 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.51 44.0 4.17e-01 99.1% 95.6%