←Back to structures

MH460829.1__AXF40699.1__Ac3_130__00130

Bact-Vir

MH460829.1__AXF40699.1__Ac3_130__00130

Identity

Accession:
MH460829 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Lazarusvirus› Acinetobacter_phage_vB_ApiM_fHyAci03

TaxID: 2269366

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-90
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 49.0 3.92e-01 79.4% 51.2%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.65 44.0 4.49e-01 71.4% 93.3%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.65 41.0 3.57e-01 87.3% 43.2%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 46.0 4.19e-01 87.3% 56.2%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.61 45.0 3.72e-01 81.0% 50.9%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.59 45.0 3.53e-01 98.4% 38.8%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.59 45.0 3.89e-01 81.0% 69.4%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 43.0 3.66e-01 82.5% 65.2%
1r26A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 43.0 3.70e-01 84.1% 65.5%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.39e-01 77.8% 49.6%
1x5eA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 42.0 3.56e-01 84.1% 67.0%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 39.0 3.75e-01 76.2% 93.4%
4tveA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 44.0 3.66e-01 90.5% 68.4%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 48.0 3.03e-01 98.4% 32.4%
1q9jB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.54 46.0 3.28e-01 93.7% 36.0%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 39.0 3.36e-01 84.1% 46.7%
3tcoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 40.0 3.46e-01 81.0% 67.0%
5g5tA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 38.0 2.71e-01 77.8% 31.9%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 39.0 2.73e-01 82.5% 47.3%
3iylW04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 37.0 2.51e-01 76.2% 39.9%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 45.0 3.01e-01 95.2% 27.4%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.96e-01 81.0% 33.8%
8hnzA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 46.0 2.82e-01 100.0% 72.4%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.61e-01 88.9% 23.7%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 44.0 2.81e-01 98.4% 37.5%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.66e-01 88.9% 41.8%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.50 42.0 3.12e-01 93.7% 51.5%
1xdnA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.50 36.0 2.68e-01 79.4% 31.0%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3404585 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 45.0 4.93e-01 76.2% 84.0%
3229204 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 48.0 5.11e-01 77.8% 87.3%
4929483 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 57.0 4.66e-01 100.0% 51.7%
3739551 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 40.0 4.65e-01 76.2% 100.0%
3211001 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.63 33.0 2.90e-01 92.1% 33.3%
4449615 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.62 42.0 3.81e-01 71.4% 90.0%
3416458 386.1.1.259 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.62 41.0 4.70e-01 74.6% 95.6%
3936608 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 3.59e-01 74.6% 92.7%
5028466 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.59 41.0 3.33e-01 73.0% 90.0%
3664203 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.58 49.0 2.96e-01 90.5% 60.3%
3927790 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 38.0 4.38e-01 76.2% 95.6%
5074558 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.58 40.0 3.21e-01 71.4% 58.3%
4026701 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.58 47.0 3.46e-01 98.4% 37.0%
4379527 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.57 39.0 3.63e-01 71.4% 95.3%
3224950 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.55e-01 77.8% 100.0%
3400449 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 43.0 3.14e-01 82.5% 29.1%
3297758 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.57 39.0 2.99e-01 71.4% 77.5%
3949260 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.57 44.0 3.67e-01 84.1% 71.8%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 50.0 3.98e-01 98.4% 63.2%
5013988 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 39.0 3.23e-01 79.4% 100.0%
3809821 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 47.0 2.99e-01 100.0% 31.5%
3971556 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.54 43.0 3.54e-01 87.3% 89.6%
3718054 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.54 37.0 2.52e-01 71.4% 22.5%
1787990 2003.1.2.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.53 42.0 3.08e-01 85.7% 42.8%
3920103 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 40.0 3.59e-01 81.0% 87.8%
5004274 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 39.0 3.76e-01 82.5% 82.7%
5078978 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 39.0 2.71e-01 85.7% 94.0%
4386701 310.2.1.35 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954 0.52 39.0 2.98e-01 81.0% 37.2%
5038306 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.51 35.0 3.14e-01 71.4% 98.9%
3598307 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 46.0 4.00e-01 100.0% 87.4%
3619623 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.50 37.0 3.73e-01 79.4% 92.3%
D2 high residues 96-164
PDB
Domain cluster: rep: MF979560.1__ATS93585.1__P1A145kb_p185__00185__D613-677
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.74 61.0 6.22e-01 95.7% 92.6%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.70 64.0 5.06e-01 100.0% 75.4%
6cgvM01 1.20.120.1500 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa 0.70 60.0 4.91e-01 98.6% 50.7%
2qnlA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.69 63.0 4.72e-01 100.0% 44.4%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.69 61.0 5.78e-01 100.0% 89.3%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 48.0 4.24e-01 76.8% 62.0%
4iaoA01 1.20.120.1710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 51.0 4.28e-01 94.2% 50.0%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.66 47.0 4.95e-01 75.4% 86.7%
2qguA02 1.10.10.640 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › phospholipid-binding protein 0.65 56.0 5.34e-01 89.9% 79.5%
3cqxC00 1.20.58.890 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 46.0 4.39e-01 73.9% 77.8%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.65 47.0 4.00e-01 76.8% 94.6%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 46.0 4.34e-01 73.9% 90.1%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 54.0 5.69e-01 94.2% 100.0%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.63 45.0 3.89e-01 76.8% 71.4%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 43.0 3.47e-01 71.0% 76.0%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.63 45.0 3.90e-01 75.4% 58.9%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 44.0 4.71e-01 73.9% 85.0%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.62 49.0 4.19e-01 84.1% 85.3%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 47.0 3.13e-01 79.7% 43.1%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.62 49.0 4.18e-01 84.1% 85.3%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.62 48.0 4.07e-01 84.1% 84.6%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 43.0 3.33e-01 72.5% 36.1%
3wfwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 45.0 3.58e-01 78.3% 44.2%
5ha6B00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 43.0 4.14e-01 73.9% 83.5%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 55.0 4.96e-01 100.0% 96.8%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.61 46.0 3.41e-01 79.7% 40.2%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 44.0 3.87e-01 78.3% 81.4%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 43.0 4.38e-01 75.4% 77.6%
2lsgA00 1.20.58.1280 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain 0.59 42.0 3.81e-01 78.3% 53.6%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 55.0 4.75e-01 100.0% 96.1%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.59 50.0 4.91e-01 95.7% 96.1%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.59 46.0 3.99e-01 82.6% 69.6%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 53.0 4.74e-01 100.0% 90.7%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.59 42.0 4.35e-01 76.8% 81.2%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.59 42.0 3.90e-01 75.4% 94.3%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.58 46.0 3.89e-01 84.1% 85.6%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 54.0 4.56e-01 100.0% 90.7%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.58 51.0 4.27e-01 98.6% 82.4%
2gl2B00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 41.0 3.50e-01 73.9% 79.8%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.57 49.0 4.25e-01 100.0% 72.8%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 50.0 4.05e-01 100.0% 81.5%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.56 42.0 4.32e-01 81.2% 95.5%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.56 50.0 3.99e-01 100.0% 74.8%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.56 49.0 3.65e-01 100.0% 92.4%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.56 48.0 4.23e-01 98.6% 100.0%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.55 50.0 3.73e-01 100.0% 70.1%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.55 48.0 4.56e-01 100.0% 89.4%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 45.0 4.02e-01 91.3% 99.0%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 48.0 4.13e-01 100.0% 89.3%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 38.0 3.22e-01 75.4% 48.9%
3a7mA01 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.54 45.0 3.92e-01 94.2% 73.6%
4gyoB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 43.0 3.43e-01 95.7% 45.3%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.52 40.0 3.86e-01 82.6% 84.8%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.50 35.0 2.90e-01 75.4% 37.1%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3815475 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.81 72.0 4.94e-01 97.1% 37.3%
3738995 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.74 59.0 6.05e-01 89.9% 90.8%
3466259 3722.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.70 64.0 3.96e-01 100.0% 32.3%
5060145 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.69 60.0 6.18e-01 94.2% 100.0%
4038171 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.69 59.0 5.49e-01 98.6% 83.3%
4996292 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.69 49.0 4.34e-01 75.4% 52.0%
4978213 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.68 49.0 4.07e-01 75.4% 43.3%
3205548 632.7.1.51 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Etd1 0.68 61.0 6.14e-01 95.7% 100.0%
3836003 3684.1.1.2 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.68 47.0 3.37e-01 73.9% 78.5%
4886448 7586.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in prismane-like proteins › Rossmann-like domain in prismane-like proteins › Rossmann-like domain in prismane-like proteins › Prismane 0.67 60.0 5.20e-01 100.0% 72.4%
3595253 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.67 59.0 4.76e-01 100.0% 78.5%
4008053 4168.1.1.7 ↗ alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › PF26769 0.66 48.0 3.62e-01 76.8% 32.1%
3987991 5086.1.1.94 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD 0.66 48.0 3.35e-01 75.4% 97.6%
4499889 192.24.1.1 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RPC3_helical 0.66 47.0 4.27e-01 75.4% 78.5%
4091184 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.66 57.0 4.85e-01 98.6% 64.3%
3720395 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.66 47.0 3.03e-01 76.8% 15.4%
3455096 3722.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.66 56.0 3.97e-01 97.1% 29.8%
5043437 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.65 50.0 4.33e-01 82.6% 79.0%
3172387 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.65 46.0 3.88e-01 75.4% 52.2%
5063208 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.64 52.0 4.24e-01 87.0% 84.0%
3737296 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.64 47.0 3.78e-01 76.8% 81.5%
3308724 3721.1.1.2 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › MAP65_ASE1 0.64 57.0 5.22e-01 98.6% 75.6%
3254545 103.11.1.0 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related 0.63 41.0 4.47e-01 81.2% 81.8%
4149566 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.63 45.0 3.06e-01 75.4% 29.6%
3627449 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.63 44.0 3.98e-01 73.9% 84.2%
3628940 3755.1.1.0 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.63 47.0 3.94e-01 78.3% 78.2%
3406963 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.62 54.0 3.60e-01 100.0% 79.7%
3456370 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 44.0 3.40e-01 75.4% 74.2%
3853566 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.61 55.0 4.59e-01 98.6% 78.3%
3216082 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 54.0 4.55e-01 98.6% 77.4%
5074957 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.60 51.0 5.10e-01 95.7% 92.9%
5061261 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.60 41.0 4.30e-01 79.7% 76.6%
3783600 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.60 43.0 3.68e-01 75.4% 70.9%
3977410 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.59 41.0 3.74e-01 72.5% 94.7%
3918881 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.59 43.0 3.95e-01 76.8% 81.1%
3738224 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.59 41.0 3.95e-01 72.5% 93.8%
3486556 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.59 43.0 4.00e-01 76.8% 85.9%
4581983 5086.1.1.13 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › T3SSipB 0.59 45.0 3.63e-01 84.1% 93.6%
2035464 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.59 41.0 3.56e-01 73.9% 47.3%
3167884 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 42.0 2.87e-01 75.4% 31.3%
3263961 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.57 48.0 3.69e-01 98.6% 84.0%
4031068 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.56 41.0 3.92e-01 79.7% 94.1%
5028218 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.56 46.0 4.77e-01 94.2% 96.9%
4020971 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 46.0 3.28e-01 97.1% 81.2%
3245538 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 48.0 4.24e-01 100.0% 93.3%
3911469 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.54 48.0 3.73e-01 100.0% 70.3%
3812703 3758.1.1.7 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1 0.53 45.0 3.28e-01 100.0% 48.4%
3189527 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 39.0 4.00e-01 76.8% 87.7%
3261605 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.52 39.0 3.80e-01 82.6% 71.2%