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MH494197.1__AXC39068.1__X__00356

Bact-Vir

MH494197.1__AXC39068.1__X__00356

Identity

Accession:
MH494197 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-49
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.72 45.0 3.42e-01 100.0% 27.5%
3n54B03 3.30.300.210 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Nutrient germinant receptor protein C, domain 3 0.71 56.0 4.11e-01 100.0% 30.8%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.67 51.0 3.94e-01 100.0% 35.9%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 52.0 4.07e-01 93.2% 56.2%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 53.0 4.20e-01 95.5% 59.8%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 42.0 3.24e-01 88.6% 28.2%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.63 51.0 3.76e-01 100.0% 70.3%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.63 54.0 3.38e-01 100.0% 22.7%
8enbA01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.60 45.0 3.79e-01 86.4% 65.1%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.60 52.0 3.72e-01 100.0% 34.6%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 42.0 3.45e-01 100.0% 40.0%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 45.0 3.00e-01 100.0% 25.0%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.58 38.0 2.57e-01 97.7% 15.7%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 44.0 2.98e-01 90.9% 44.7%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.57 45.0 2.95e-01 100.0% 17.9%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.57 42.0 3.04e-01 90.9% 45.1%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.56 44.0 3.26e-01 100.0% 40.3%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 41.0 2.90e-01 88.6% 78.9%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 46.0 3.64e-01 100.0% 52.9%
2crmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.95e-01 100.0% 73.4%
2znhA03 6.20.40.10 Special › Other non-globular › Porin MspA ribbon fold › 0.55 44.0 4.42e-01 100.0% 91.5%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 41.0 2.55e-01 86.4% 34.9%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.55 38.0 3.74e-01 100.0% 69.2%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.54 42.0 3.41e-01 88.6% 44.1%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.54 43.0 2.81e-01 86.4% 63.7%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 39.0 2.68e-01 86.4% 55.7%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.01e-01 97.7% 82.7%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.51e-01 97.7% 64.6%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 43.0 2.87e-01 93.2% 31.4%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.10e-01 95.5% 68.5%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.76e-01 100.0% 17.2%
3mjgB00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.53 39.0 3.22e-01 90.9% 49.5%
3regA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 2.95e-01 95.5% 71.9%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 2.97e-01 100.0% 37.1%
2uxwA03 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.52 41.0 3.18e-01 95.5% 66.1%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 2.98e-01 100.0% 35.6%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 39.0 2.70e-01 100.0% 20.8%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.42e-01 100.0% 47.9%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 3.25e-01 100.0% 49.5%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 36.0 2.25e-01 75.0% 41.9%
2e2dC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 34.0 2.92e-01 90.9% 36.2%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 36.0 2.48e-01 93.2% 30.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5052888 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.83 73.0 5.23e-01 100.0% 36.8%
4223302 3234.1.1.2 a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.76 63.0 3.81e-01 100.0% 13.9%
5054112 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 5.89e-01 100.0% 72.3%
4534897 3234.1.1.2 a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.74 60.0 3.64e-01 100.0% 13.1%
3264140 3082.1.1.0 extended segments › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 0.72 49.0 5.25e-01 72.7% 91.4%
147021 3234.1.1.2 a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.71 56.0 3.46e-01 100.0% 14.1%
5050213 192.2.1.87 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D 0.69 52.0 3.37e-01 100.0% 18.9%
5037750 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.68 44.0 2.92e-01 100.0% 15.4%
3587188 2.1.1.33 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF961 0.67 56.0 4.36e-01 100.0% 89.4%
4156749 3234.1.1.2 a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.66 51.0 3.28e-01 100.0% 15.8%
3503534 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.66 49.0 3.45e-01 100.0% 24.8%
3503098 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.66 49.0 4.07e-01 100.0% 42.1%
3691484 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.65 46.0 2.96e-01 77.3% 17.8%
2097771 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.64 54.0 3.69e-01 100.0% 38.2%
4493573 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.64 43.0 2.87e-01 72.7% 16.5%
4089814 327.13.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C 0.64 45.0 3.13e-01 77.3% 22.2%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.63 49.0 2.99e-01 100.0% 12.8%
3947895 4.26.1.4 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › zf-IS66 0.63 49.0 4.32e-01 90.9% 61.4%
3986836 375.1.1.253 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.62 49.0 4.66e-01 90.9% 72.7%
5045252 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.62 45.0 3.51e-01 100.0% 34.0%
3912477 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.62 50.0 3.02e-01 93.2% 34.4%
2832217 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.62 50.0 3.64e-01 100.0% 36.6%
3629613 11.12.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.61 52.0 3.42e-01 97.7% 77.9%
3936858 11.12.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.61 53.0 3.04e-01 100.0% 39.6%
4117447 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.61 53.0 3.25e-01 97.7% 36.0%
4997962 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.60 52.0 3.27e-01 100.0% 94.6%
3233984 209.1.1.14 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 0.60 47.0 3.14e-01 95.5% 31.3%
4931409 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 3.73e-01 100.0% 54.6%
3648114 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.60 46.0 3.82e-01 97.7% 45.9%
3504078 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 49.0 3.15e-01 100.0% 22.1%
4444422 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 47.0 3.51e-01 93.2% 39.0%
4179803 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.59 41.0 2.79e-01 79.5% 17.5%
4928319 304.48.1.4 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.58 47.0 3.03e-01 95.5% 59.2%
4175959 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.58 46.0 2.87e-01 95.5% 15.7%
4136078 3943.1.1.2 beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › FliD_C 0.58 43.0 3.60e-01 88.6% 64.4%
5027751 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.57 46.0 3.30e-01 100.0% 36.0%
4238490 812.2.1.1 a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase 0.56 42.0 3.90e-01 93.2% 66.2%
4981316 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.55 42.0 2.86e-01 90.9% 29.5%
4324097 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.55 41.0 3.35e-01 90.9% 69.0%
4965094 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 41.0 3.08e-01 95.5% 34.3%
3881192 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 38.0 2.84e-01 100.0% 24.1%
3915626 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 41.0 3.26e-01 86.4% 40.0%
4079740 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.53 41.0 3.26e-01 90.9% 38.1%
3646089 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.53 44.0 3.72e-01 100.0% 53.8%
3287591 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 40.0 2.25e-01 88.6% 21.3%
3251044 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.52 37.0 2.73e-01 95.5% 23.4%
4189845 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.52 36.0 2.44e-01 79.5% 18.6%
3397147 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.51 42.0 3.03e-01 97.7% 72.4%
3949584 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.51 39.0 2.93e-01 100.0% 76.7%
3328712 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.50 39.0 2.64e-01 97.7% 22.6%
4029069 304.106.1.1 a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 › RtcB 0.50 38.0 2.35e-01 100.0% 17.6%
3981111 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.50 39.0 2.86e-01 100.0% 31.0%
3741228 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 38.0 2.27e-01 100.0% 85.4%