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MH494197.1__AXC39128.1__X__00416
Bact-VirMH494197.1__AXC39128.1__X__00416
Identity
- Accession:
- MH494197 ↗
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Taxonomy
TaxID: 2267248
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-48
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3szpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 50.0 | 3.94e-01 | 92.9% | 33.7% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 57.0 | 3.91e-01 | 100.0% | 44.2% |
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 55.0 | 4.27e-01 | 97.6% | 78.9% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.63 | 35.0 | 2.81e-01 | 81.0% | 27.8% |
| 6g1dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 53.0 | 4.35e-01 | 100.0% | 97.6% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 54.0 | 4.12e-01 | 97.6% | 73.7% |
| 2i0zA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 53.0 | 3.27e-01 | 100.0% | 85.0% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.61 | 41.0 | 2.66e-01 | 71.4% | 15.7% |
| 2f1rA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 39.0 | 2.70e-01 | 100.0% | 17.6% |
| 1biqA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.61 | 55.0 | 3.18e-01 | 100.0% | 60.0% |
| 1rp0A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 51.0 | 3.21e-01 | 97.6% | 84.3% |
| 5rl9B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 43.0 | 3.00e-01 | 90.5% | 22.1% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 51.0 | 3.79e-01 | 97.6% | 54.1% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 52.0 | 3.25e-01 | 100.0% | 21.8% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.58 | 48.0 | 3.00e-01 | 100.0% | 31.4% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.57 | 51.0 | 3.14e-01 | 100.0% | 17.6% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 49.0 | 3.41e-01 | 100.0% | 28.5% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.57 | 40.0 | 3.29e-01 | 76.2% | 61.5% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 50.0 | 3.73e-01 | 100.0% | 86.5% |
| 4p63D00 | 3.40.910.10 | Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase | 0.56 | 50.0 | 2.96e-01 | 100.0% | 15.4% |
| 1vloA01 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.56 | 42.0 | 3.11e-01 | 92.9% | 67.1% |
| 2kx2A00 | 3.30.780.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › | 0.55 | 44.0 | 3.50e-01 | 95.2% | 87.5% |
| 1wsrA01 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.54 | 42.0 | 3.04e-01 | 95.2% | 71.9% |
| 5xdsA02 | 3.30.230.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 | 0.54 | 48.0 | 3.57e-01 | 97.6% | 85.3% |
| 6dftJ00 | 3.40.910.10 | Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase | 0.54 | 44.0 | 2.68e-01 | 100.0% | 16.1% |
| 4cvnA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 2.76e-01 | 95.2% | 22.3% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.52 | 47.0 | 3.33e-01 | 100.0% | 36.1% |
| 3tthB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 41.0 | 2.81e-01 | 92.9% | 61.0% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.51 | 36.0 | 3.13e-01 | 78.6% | 53.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976992 | 2002.1.1.300 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, C-C_Bond_Lyase | 0.80 | 50.0 | 2.93e-01 | 85.7% | 9.2% |
| 3605428 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.79 | 54.0 | 3.37e-01 | 71.4% | 13.3% |
| 4807860 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.71 | 53.0 | 3.42e-01 | 81.0% | 70.5% |
| 3187789 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.71 | 51.0 | 2.97e-01 | 85.7% | 9.6% |
| 3261517 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.65 | 54.0 | 3.69e-01 | 100.0% | 25.8% |
| 4987371 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 52.0 | 3.81e-01 | 90.5% | 38.3% |
| 5003867 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.65 | 53.0 | 3.37e-01 | 90.5% | 62.5% |
| 5027290 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.64 | 57.0 | 3.77e-01 | 100.0% | 95.8% |
| 3682884 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.63 | 46.0 | 2.87e-01 | 78.6% | 87.1% |
| 4954786 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 56.0 | 4.39e-01 | 100.0% | 48.2% |
| 5049281 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 50.0 | 3.87e-01 | 90.5% | 43.0% |
| 2613 | 101.1.2.105 ↗ | alpha arrays › HTH › HTH › winged helix domain › MotA_activ | 0.62 | 54.0 | 4.12e-01 | 97.6% | 73.7% |
| 185477 | 4255.1.1.1 ↗ | few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 | 0.62 | 50.0 | 4.28e-01 | 90.5% | 73.1% |
| 4984241 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.59 | 45.0 | 2.73e-01 | 92.9% | 12.2% |
| 4332395 | 2003.1.2.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like | 0.58 | 48.0 | 3.01e-01 | 92.9% | 84.1% |
| 1240484 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.58 | 51.0 | 3.05e-01 | 100.0% | 13.8% |
| 5015916 | 2002.1.1.459 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF26257 | 0.57 | 47.0 | 2.82e-01 | 100.0% | 57.2% |
| 3712132 | 5081.1.1.2 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 | 0.57 | 50.0 | 3.24e-01 | 100.0% | 63.1% |
| 4506746 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.57 | 41.0 | 2.69e-01 | 78.6% | 21.6% |
| 5011299 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 3.52e-01 | 95.2% | 47.8% |
| 3386239 | 2499.1.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 | 0.56 | 49.0 | 2.80e-01 | 100.0% | 67.4% |
| 2066758 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.55 | 39.0 | 3.86e-01 | 90.5% | 72.9% |
| 3947868 | 2484.1.1.87 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C | 0.55 | 42.0 | 2.93e-01 | 100.0% | 23.0% |
| 4931635 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.55 | 47.0 | 3.78e-01 | 97.6% | 66.7% |
| 4950846 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.52 | 36.0 | 3.46e-01 | 76.2% | 58.0% |
| 4957800 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.51 | 37.0 | 3.46e-01 | 81.0% | 72.7% |